Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00823 ATGACTACGGAACCAGACATTGAATCCAAGTACGCTCATAACGGCAAGGTTATGGTGGGCACTGCCATTCTTCTCTTCCTTCTCATAATCCTTATAATTTTGTTCAACACCTACGTCCGCTTCTGCCGCCGTCGCCGCCGCCGTGCTCTCCTTTCTCATTCCCTTCCGATCTCTTCCTCCGCCGAGCCCCGTCTCGACCCTTCCGTCATCAAGTCCCTCCCTACTTTCTCCTTCTCCGCCGCCCTCCACTCTCTCCAGGACTGCGCCGTGTGCCTGTCGGAGTTCGCCGACAGCGACAAAGTCCGCGCGCTCCCCAACTGTAACCACGCTTTCCACGCCCACTGCATCGACGCGTGGTTCGCCTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCGGCCACGGGTTGCTCTGACGCCGAACCCGGTTCGGTTCCGGTTCGTGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCCAATTGCGTGTCCGAGAAAAGCGTTGGATATAATGATAGAAGTGGGAGATGTGGAAAGAGGGTTGGATCCGGTAACCGGAGATGACGGATTCAGATGCTCATTGAAGAGGTGGAAAGAAGGGAATTCAATGATTGGACATTGTGGATAA 636 0.5582 MTTEPDIESKYAHNGKVMVGTAILLFLLIILIILFNTYVRFCRRRRRRALLSHSLPISSSAEPRLDPSVIKSLPTFSFSAALHSLQDCAVCLSEFADSDKVRALPNCNHAFHAHCIDAWFASHSTCPLCRTPVQPATGCSDAEPGSVPVREADEGCSSSLGPPIACPRKALDIMIEVGDVERGLDPVTGDDGFRCSLKRWKEGNSMIGHCG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00823 211 SMART ring_2 88 129 IPR001841 -
Lapu6g00823 211 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lapu6g00823 211 SUPERFAMILY RING/U-box 70 138 - -
Lapu6g00823 211 Pfam Ring finger domain 87 130 IPR001841 -
Lapu6g00823 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 136 IPR013083 -
Lapu6g00823 211 FunFam E3 ubiquitin-protein ligase ATL6 54 136 - -
Lapu6g00823 211 CDD RING-H2_EL5-like 87 130 - -
Lapu6g00823 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00823 Lapu-Chr6 8471040 8472309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00823 11 138 Rapid Response to Elicitors AT3G16720 43.151 1.94e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00823 - - pvu:PHAVU_001G208400g 337.035