Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00806 ATGTCCCTCGCATCTTCAACCCTCTCATGTGCTTTCCCTGTGAAACAAACCTCAGGGGACACGTTTATCTCAACTATGCTTCAATGGCTGAGATATATTTGCCAAACTCCTTGTCCTCAAAGAGCTATATTGTCTTTAGTTGATGTCGTGCTCCTCTTGTTTCTCTTCGTGTTTGTTGCCACCAAGCTCTGGAAAAGGTCCACCTTCAATGGTGGTTCCTCTACCGACCTCAACACACCATTAATCCGAAACAACAGACCCGCTGTCTTGACAACTATGCGATTTAAGTTAACCATAACTGCAGTGGTTGTGTTGACTATACTCTACACGGTTGCTTCCGTTCTTACGTTTAGCAGTTCCTCCATGGCGCCGTGGAAGCAAGTTGACGAGGTGTTTTGGTTGGTCCAGGCCATAACACATGCCGTACTTGCACTCTTCATCATCCACGAGAAAAGGTTTCAAGCCGTTGCACACCCTCTATCGGTTCGAGTTTATTGGATTGTAAATTTCTCTGTCATTTCGTTGTTCACTGTTTCTGCGGTTATACGTTTGGTCTCTGTGGACGCGGATGAAGCCGAAGGCTTCAGGGTGGACGAGGTGGTCTCTTTCATTTCGTTCCCTCTGTCTTTATTTCTTCTTTTTGAGGCGGTTGAAGGATCCACCGGCATTGTTTTGGCGACAGAAGAAACACGACCACTTGTTGACGGAAAAGCTCATGATGGTATTGAGAGAAAATCAGAGGTTACTGGCTTTGCTTCAGCTTCTCTATTATCCAAGGCTTTTTGGATATGGATAAACCCCTTGTTGAGTAAAGGGTACAAGTCCGTGCTGAAGATTGATGATATTCCAACGCTTTCTCCTGAGCATAGAGCTGAGAGAATGTCATCTATTTTTGAATCAAAATGGACTTTATCAAACGAGACATCCAAGCATCCAGTTATTATGACTTTGCTTCGGTGCTTTTGGAAGGAGTTAGCCTTCACCGCCTTCCTTGCATTCATTAGGCTCTGTGTCATGTTTGTGGGGCCGTTTCTGATACAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAGCTCCGAATATGAAGGATACTACCTCGTGTTGATTCTTCTTGTTGCTAAGTTCATTGAAGTCATGAGTACTCATCATTTCAACTTCCAAGCTCAAAAGCTTGGGATGCTTCTACGCTGCACTCTTATCTCCTCTTTGTATAAAAAGGGGTTAAAACTATCATTCTCTTCTCGGAAGGATCACGGAGTTGGGACAATTGTGAATTACATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTCCAGTTGCATGCTGTGTGGATGATGCCATTCCAAGTTGGTATTGGCTTGGTTCTGCTTTACAATTGTTTAGGTGCCCCAGTTGTCACCGCGTTTCTTGGTCTGTTTGGTGTTTTTGCCTATTCTGTGATGGGCAACCAAAGAAACAACAAGTTCCAACAAAATGTGATGGTGAACCGGGACTCGAGAATGAAAGCTGTGAATGAGATGCTCAACTACATGCGTGTGATCAAGTTTCAGGCCTGGGAGGAACATTTCAAGCAGAGAATTTTGAGCTTCCGTGAGACGGAGTATGGGTGGCTCTCCAAGTTGATGTTCTCAATTTGTGGCACTGTGATTGTGATGTGGAGCACGCCGTCGTTGGTGTCAACTCTTACATTTGGAACGGCTATTTTGTTGGGAGTTCAACTTGATGCAGCCACAGTGTTCACCACAACAACTGTGTTCAGGTTATTGCAGGATCCTATTAGGACATTCCCACAGTCTATGATAGCTCTTTCACAAGCAAAGATATCACTGGAGAGGTTAGATAGGTTCATGTTGAGCGGGGAATTGTCGAATGATTCCGTTGAGAGAGAGGAAGGATGTGGTGGACAAACAGCAGTGGAAATCATAGATGGAACTTTTAGTTGGGATGATGATAACTCGCGGCAGGACTTAAAAAATATCAATTTGAAGATCAAAAAGGGTGAGCTTACAGCAATTGTTGGGACGGTAGGGTCAGGAAAGTCATCCCTTCTTGCAACAATTCTTGGAGAGATGCACAAGATTTCCGGAAAGGTTCGGGTTTGTGGGAGCGTTGCTTATGTTGCACAAACATCTTGGATTCAGAATGGGACTATTGAAGAAAACATTCTCTTCGGTTTACCAATGGACAGGCAGAGGTACAATGAAGCTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGAAATGATGGAATATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTAAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTATCAAGACTGTGATGTCTATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTTAGGGGAGCTCTAAAAGGCAAGACCACTATTCTTGTAACACACCAAGTAGATTTCCTACATAATGTGGATCGTATATTAGTGACGAGGGACAGTATGATAGTCCAATCAGGGAAATATGATGATCTATTAGAGTCTGGAATGGATTTTAAAGCTCTCGTCGTTGCGCATGAGACCTCCATGGAATTAGTAGAGCAGGGTATGGTCATGCCAGGTGAAAATTTGAACAAACCAACGAAAGCTCTAGAGACAACATCAATTAACAAGGGAACCAATTGTGAAAACAATTCTATTGATAAGCCTAAGAAAAGATCTAAACTCATCCAAGAAGAGGAGAGAGCAACTGGCAAAGTGAGCTTACATATGTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTACAGTAGTATTGGTTCTTACTTTGTTGTGGCAAGCGTCTTTGATGGCAAGTGATTATTGGTTGGCATATGAAACCTCAGAAGAACGTTCTAAAATGTTTAACCCTTCTCTGTTCATGTGCGTCTATTCAACTATTACTGTCGTTTCCATTGTTGTGTTAGTGACAAGATGCTACTTCTTTACACTCTTGGGGCTAAGGACTGCACAACTATTCTTCACACAAATTGTTCGTAGCATCTCGCGTGCGCCCATGTCTTTCTTTGACACTACGCCATCTGGGAGAATTCTAAGTAGGGCATCCACTGATCAAACCAATGTTGATGCCCCTCTCCCCTTGGTCACCGGAGTTGTTATGGCCATGTACATTTCAGTGCTCAGCATCTTCATCATAACCTGTCAAAATTCTTGGCCAACAGTGTTTTTGATAATTCCTCTTGTTTGGTTGAATATATGGTACCGGGGTTACTATCTTGCATCATCTCGGGAATTTACTCGCATGGATTCAATCACCAAAGCACCAGTTATTCATTACTTCTCCGAAAGCATTGCGGGGGTCATGACAATTCGTTCATTCAGAAAGCAAAAGATATTCTTTGATGAAAATCTCAAACGGGTGAATGCTAATTTGCGAATAGATTTCCACAACTACAGTGCTAATGAGTGGTTGGGATTTCGCGTAGAATTGTTTGGAAGCTTTGTCTTTTGCATTTCTGCCATGTTCATGATCATCTTACCCAGCAGTATTATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGGATGTCCTTAAACTCTCTCTTGTTCTGGACTGTATACATGAGTTGTTTCATGGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCAGCATGGAATATCAAGGATCATCTACCTCCTTCAAATTGGCCCAGTCAAGGCAATGTAGATATCAAAGACCTGCAGGTGAGATATCGTCCAAACACTCCTCTAGTGCTCAAAGGCATTACTTTAAGCATTAGTGGAGGTGAAAAAGTTGGCGTTGTGGGTCGAACTGGGAGCGGAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTGCGGGAGGGAAAATAATAATTGATGGTATTGACATATCTATCTTGGGACTTCACGATCTTAGATCACGGTTTGGTATCATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATTGGACAATATACAGATGAAGAAATATGGAAGAGCTTGGAACGTTGTCAACTAAAAGATGTTGTAGCTGCTAAGCCTGAAAAACTTGACTCTTTAGTGGTGGAAAATGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTCTTGGGAGGGTTATACTCAAGAGAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGGTGTGATTCAGAAGATCATAAGAGAAGAGTTTGCAGCATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGATTGTGACAGAGTTTTAGTTGCAGACGCAGGACGAGCCAAAGAATATGACAAACCTTCGAATTTGCTCAAGAGAGAATCTCTGTTTGGGGCATTAGTTCAAGAATATGCCAACCGATCCACTGGACTGTAA 4509 0.4296 MSLASSTLSCAFPVKQTSGDTFISTMLQWLRYICQTPCPQRAILSLVDVVLLLFLFVFVATKLWKRSTFNGGSSTDLNTPLIRNNRPAVLTTMRFKLTITAVVVLTILYTVASVLTFSSSSMAPWKQVDEVFWLVQAITHAVLALFIIHEKRFQAVAHPLSVRVYWIVNFSVISLFTVSAVIRLVSVDADEAEGFRVDEVVSFISFPLSLFLLFEAVEGSTGIVLATEETRPLVDGKAHDGIERKSEVTGFASASLLSKAFWIWINPLLSKGYKSVLKIDDIPTLSPEHRAERMSSIFESKWTLSNETSKHPVIMTLLRCFWKELAFTAFLAFIRLCVMFVGPFLIQSFVDFTSGKRSSEYEGYYLVLILLVAKFIEVMSTHHFNFQAQKLGMLLRCTLISSLYKKGLKLSFSSRKDHGVGTIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLVLLYNCLGAPVVTAFLGLFGVFAYSVMGNQRNNKFQQNVMVNRDSRMKAVNEMLNYMRVIKFQAWEEHFKQRILSFRETEYGWLSKLMFSICGTVIVMWSTPSLVSTLTFGTAILLGVQLDAATVFTTTTVFRLLQDPIRTFPQSMIALSQAKISLERLDRFMLSGELSNDSVEREEGCGGQTAVEIIDGTFSWDDDNSRQDLKNINLKIKKGELTAIVGTVGSGKSSLLATILGEMHKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMDRQRYNEAIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTILVTHQVDFLHNVDRILVTRDSMIVQSGKYDDLLESGMDFKALVVAHETSMELVEQGMVMPGENLNKPTKALETTSINKGTNCENNSIDKPKKRSKLIQEEERATGKVSLHMYKLYCTEAFGWWGITVVLVLTLLWQASLMASDYWLAYETSEERSKMFNPSLFMCVYSTITVVSIVVLVTRCYFFTLLGLRTAQLFFTQIVRSISRAPMSFFDTTPSGRILSRASTDQTNVDAPLPLVTGVVMAMYISVLSIFIITCQNSWPTVFLIIPLVWLNIWYRGYYLASSREFTRMDSITKAPVIHYFSESIAGVMTIRSFRKQKIFFDENLKRVNANLRIDFHNYSANEWLGFRVELFGSFVFCISAMFMIILPSSIIKPENVGLSLSYGMSLNSLLFWTVYMSCFMENKMVSVERIKQFTNIPSEPAWNIKDHLPPSNWPSQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPAGGKIIIDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSLVVENGENWSVGQRQLLCLGRVILKRSRLLFMDEATASVDSQTDGVIQKIIREEFAACTIISIAHRIPTVMDCDRVLVADAGRAKEYDKPSNLLKRESLFGALVQEYANRSTGL* 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00806 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 863 IPR003439 GO:0005524
Lapu6g00806 1502 SMART AAA_5 1286 1470 IPR003593 GO:0016887
Lapu6g00806 1502 SMART AAA_5 667 845 IPR003593 GO:0016887
Lapu6g00806 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1494 IPR003439 GO:0005524
Lapu6g00806 1502 SUPERFAMILY ABC transporter transmembrane region 940 1240 IPR036640 GO:0005524|GO:0016020
Lapu6g00806 1502 Gene3D ABC transporter type 1, transmembrane domain 905 1241 IPR036640 GO:0005524|GO:0016020
Lapu6g00806 1502 Gene3D ABC transporter type 1, transmembrane domain 295 618 IPR036640 GO:0005524|GO:0016020
Lapu6g00806 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 945 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00806 1502 FunFam ABC transporter C family member 3 1243 1494 - -
Lapu6g00806 1502 Gene3D - 1244 1493 IPR027417 -
Lapu6g00806 1502 CDD ABCC_MRP_domain1 640 835 - -
Lapu6g00806 1502 FunFam ABC transporter C family member 10 309 622 - -
Lapu6g00806 1502 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Lapu6g00806 1502 FunFam ABC transporter C family member 5 906 1241 - -
Lapu6g00806 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 326 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00806 1502 CDD ABCC_MRP_domain2 1258 1478 - -
Lapu6g00806 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 860 IPR027417 -
Lapu6g00806 1502 CDD ABC_6TM_ABCC_D2 943 1235 IPR044726 GO:0140359
Lapu6g00806 1502 Pfam ABC transporter 658 791 IPR003439 GO:0005524
Lapu6g00806 1502 Pfam ABC transporter 1277 1425 IPR003439 GO:0005524
Lapu6g00806 1502 Gene3D - 619 877 IPR027417 -
Lapu6g00806 1502 Pfam ABC transporter transmembrane region 327 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00806 1502 Pfam ABC transporter transmembrane region 949 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00806 1502 CDD ABC_6TM_ABCC_D1 327 614 IPR044746 GO:0140359
Lapu6g00806 1502 FunFam ABC transporter C family member 4 623 881 - -
Lapu6g00806 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1253 1493 IPR027417 -
Lapu6g00806 1502 SUPERFAMILY ABC transporter transmembrane region 314 618 IPR036640 GO:0005524|GO:0016020
Lapu6g00806 1502 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00806 Lapu-Chr6 8338858 8345279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00806 640 897 Calmodulin-binding Proteins AT2G36910 28.777 3.77e-26 115