Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00786 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGCCAACACCAACAGCCACAAAACCAACTTCATGACTCTAGTTCAGGACCATCTGCTGCTTGCAATAGCAATGCTTCCACTAATCAACAAACCAAGAAGAAAAGAAACCTTCCTGGAACCCCAGGCAAATACCCCAGTGCTGAAGTTGTTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAACGAACAAGCACTGAGGTGAAGAAACGGGTGTATGTTTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTGGGAGACCTCACTGGCATAAAAAAGCATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGTTCTAAGAGATACGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGAGAATACAAATGTGACTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACCGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGCCGCCAAACCTGCAAAGTCAAATACCGGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCATATGACCCTAAGAACCCACTTAAATCACTCCCCCAAGAACTGGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCCACCAATGCGGGTGCACTTTTTGGTGGCCCAAAAAGCATGCCTCCCTCTTCTTCCAGCCTCCAGCTAGGTTCCAACACCTCATCAACCTTCAATTACTTGCAAGACAACAAAAACGGAGGACTAATTGCTGCCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAATAGCACTAGTGCTCCTGATCATGTTTCTTCCTCTAGGCCACCATACTCTGGTGCCATGCTGCAGCATAACACCTCCTATGACCACTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGAGGAGGAGCATTCGTCAATCAATTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACGCCAACACTGCCGGGTCTGCAATGAATGATGTGGGAATGTTCAGCCAAATGCCACTGGGGAGTGAGCACAACCCGGGATTGATGAAGAACGTGGAACAAGATGGTAGTAACTGTTCGAGTTTGATCCACAGAAGAGATGTGGTTGAAGGTAACCCAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACTACTGTTCATGACTTTTTGGGCATTGGTGGATCAACTTCAAGAGTCATGAATCATTTTCAGCACCATTTTCCACACGAGGATTCAGCTATGGAGGAATCCATGTGGGATGTTTGA 1578 0.462 MSNISGDEGSFSSGNNGEEVHQESQHQQPQNQLHDSSSGPSAACNSNASTNQQTKKKRNLPGTPGKYPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMPPSSSSLQLGSNTSSTFNYLQDNKNGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVNSTSAPDHVSSSRPPYSGAMLQHNTSYDHFSPQPDLSNMAGVSGGGAFVNQLFHKGQEISQVFDANTAGSAMNDVGMFSQMPLGSEHNPGLMKNVEQDGSNCSSLIHRRDVVEGNPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFQHHFPHEDSAMEESMWDV* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00786 525 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Lapu6g00786 525 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lapu6g00786 525 SMART c2h2final6 127 157 IPR013087 -
Lapu6g00786 525 SMART c2h2final6 86 108 IPR013087 -
Lapu6g00786 525 SMART c2h2final6 162 182 IPR013087 -
Lapu6g00786 525 FunFam protein indeterminate-domain 12-like 65 133 - -
Lapu6g00786 525 MobiDBLite consensus disorder prediction 1 68 - -
Lapu6g00786 525 Gene3D Classic Zinc Finger 140 220 - -
Lapu6g00786 525 Gene3D Classic Zinc Finger 68 132 - -
Lapu6g00786 525 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Lapu6g00786 525 MobiDBLite consensus disorder prediction 1 59 - -
Lapu6g00786 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 505 IPR031140 -
Lapu6g00786 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Lapu6g00786 525 SUPERFAMILY beta-beta-alpha zinc fingers 85 183 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00786 Lapu-Chr6 8198741 8201368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00786 35 364 IDZ Gene Family AT3G50700 52.500 2.91e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00786 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00786 - - gmx:100782774 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00786 6 8198741 8201368 Lapu6g00786 6 8198741 8201368 ECH