Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00782 ATGGTGGAAAGAAGAAGAAAGCCTCTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGCTCCAACCACCAGTCTAATCCACCATGATTCTTCTCCCTCCTTCTTCCGTTTTCCTGTCGGAATCCTCCGATTATCCAACCTCACAAATCCCTCTATCGACCACTCTTCCCTCCTTGCCCTCTCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACCGGTTCTCGTCAAGAATGTTGACACCAACACACAGAAAATTGCAGTGGCTATTGCTTTGGATCCACCAGGCACCACCGCTAACACAGACTCTCCGTCTTCTAGTTCTTATTCTTCTCGAATAATGCTTCTTTTCCCTTCTTGTCATCTCCCTTTTAATGGTTCTGTGTTGGATGATCAAATAGCCTATGTATCGCCTCTTTTAGCCTTTAACCTTAACCTGCACGTGGCGTGCTTAAAATCCATTCTTCACCACGGGCAAGAGGCTTTGGCTTCTTATTTTGGACCTCAAGATAAAACGGGTGACGAGGATGCTGCTAAAAGCACTGTGGATTCTGTCATCAACGTAGAATTGGAACCGCTTGCTCTGCCCCCAAAATTTGCCTCTCTTCTTAGGGTTTCTTTTGTGAAGATACCAGAATGCGGCATCCTTGAATCCATTAGAGCAGGTTCGCCTTTTGAGTCAGAAGAGCGGCAGGACATGATCGACTTGGCATTGCAAAAGTACTTTGAAGTCGATAGGTACTTGTCCAAGGGAGATGTTTTTGGGATTAAGATAAGTTGGAATTGCAGTTCCCCCATTTGCGTTTCTTGTAATAAAAGATCATTAAATCAAAATGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGGTTTTTCGTGCCAATAAAACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCGCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGGACCTGAACGACCTGTGCCTTTGCGAGGGGACACTGTGAATATCTTGGCTGCGATACTTACGCCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGAGTATCTGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTAGTCGACTTGGCCTGCATGTGGTGGAATATAACTGTCATGATCTGATGGTGTCTGATAGAACGTCTGTTGCTGTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGAATCGCAATCTCCTGAGGGTTCACCACATGATCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCCGTCAGTGAACACAGTGATAGTTATTCCCTGGAAAAATCAAACGTTGAATCTGTGGAGAAGAGTGCTGAAAAGGCAAGTGGGCATCAGGTCCTACTGATTGCTGCTGCTGACAGTTCAGAAGGTATGCCTTCAACTATCAGACGCTGTTTTAGCCATGAAATAAGCATGGGGCCTTTGACGGAAGAGCAAAGAGCTGAAATGCTATTACAGTCACTGCAAAGTTTTTCTGATCTCCTCTCTGATACTGATTCAGAAGCTTTAGTAAAAGAAATAATTGGACAGACATCTGGTTACATGCCCAGGGACATACGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCGAGAAGCAATGCTAAAGTAGACAAAGATGTGTCTGATGACGTAGATATTAATTCCAAGATGGCAGAGGACAACAGTCACGGGAAAGTCTCGAATGAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTCAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCGATTCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGCAAGCGATCCGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCGGCACGTCCATGTGTCATCTTCTTTGATGAACTTGATTCTCTTGCGCCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACCGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAACTACTATATGTTGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACCCGAAAGTTCAAATTACATGAAGATGTCTCACTCTACTCCATTGCAAAAAAATGTCCACCAAACTTCACTGGTGCCGACATGTATGCGTTATGTGCAGATGCTTGGTTCCATGCTGCAAAGCGTAAAGTTTTGAGTGCAAATCCAGAGTCTTCCAGCAAAGATAATGAAGCAGATTCTGTTGTTGTTGTTGAATATAATGACTTTGTCCAGGTCTTAGAAGAGTTGTCGCCTTCCCTCTCAATGGCTGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTTGA 2772 0.4365 MVERRRKPLILCSTKHVINSTAPTTSLIHHDSSPSFFRFPVGILRLSNLTNPSIDHSSLLALSTPLLKTLSITSGSPVLVKNVDTNTQKIAVAIALDPPGTTANTDSPSSSSYSSRIMLLFPSCHLPFNGSVLDDQIAYVSPLLAFNLNLHVACLKSILHHGQEALASYFGPQDKTGDEDAAKSTVDSVINVELEPLALPPKFASLLRVSFVKIPECGILESIRAGSPFESEERQDMIDLALQKYFEVDRYLSKGDVFGIKISWNCSSPICVSCNKRSLNQNDNLICFKVVGMEPSDEQVFRANKTLTALVLVGSSPSALPPDLLIGGPERPVPLRGDTVNILAAILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVASRLGLHVVEYNCHDLMVSDRTSVAVAQAFKTARRYSPAILLLRHFDVFRESQSPEGSPHDQRGNTSEVASVIRKFTEPVSEHSDSYSLEKSNVESVEKSAEKASGHQVLLIAAADSSEGMPSTIRRCFSHEISMGPLTEEQRAEMLLQSLQSFSDLLSDTDSEALVKEIIGQTSGYMPRDIRALIADAGANLFPRSNAKVDKDVSDDVDINSKMAEDNSHGKVSNEIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSKDNEADSVVVVEYNDFVQVLEELSPSLSMAELKKYEQLRDQFEGTS* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00782 923 Gene3D - 811 898 - -
Lapu6g00782 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 623 IPR027417 -
Lapu6g00782 923 CDD RecA-like_PEX6_r2 649 808 IPR047533 -
Lapu6g00782 923 Gene3D - 635 913 IPR027417 -
Lapu6g00782 923 FunFam Peroxisome biogenesis protein 6 333 517 - -
Lapu6g00782 923 Gene3D - 341 540 IPR027417 -
Lapu6g00782 923 PANTHER AAA-FAMILY ATPASE 58 920 - -
Lapu6g00782 923 FunFam Peroxisomal biogenesis factor 6 635 824 - -
Lapu6g00782 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 918 IPR027417 -
Lapu6g00782 923 Pfam ATPase family associated with various cellular activities (AAA) 677 809 IPR003959 GO:0005524|GO:0016887
Lapu6g00782 923 Pfam ATPase family associated with various cellular activities (AAA) 364 515 IPR003959 GO:0005524|GO:0016887
Lapu6g00782 923 SMART AAA_5 673 813 IPR003593 GO:0016887
Lapu6g00782 923 SMART AAA_5 360 520 IPR003593 GO:0016887
Lapu6g00782 923 ProSitePatterns AAA-protein family signature. 780 798 IPR003960 GO:0005524|GO:0016887
Lapu6g00782 923 FunFam Peroxisome biogenesis protein 6 811 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00782 Lapu-Chr6 8137720 8145187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00782 643 868 Calmodulin-binding Proteins AT3G56690 39.648 4.81e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00782 K13339 - gmx:100820183 1556.96