Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00781 AACGAACCTAGGGTTTCTTTCTCCCCGTTGCACCGTCAGAGAAGGGGAAACATGGTTTCGCTGAAACTGCAGAAGCGGCTTGCAGCCAGCGTGCTGAAGTGCGGAAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGGCAAAACATCAGGAAGTTGGTAAAGGATGGGTTTATCATCAGGAAGCCGACCAAGATTCACTCTCGATCACGTGCTCGTAGGATGAAGGAGGCAAAGAGGAAGGGCCGTCACTCCGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAGATACTTTGGATGAGAAGGATGCGTGTGCTCAGACGGTTGCTTCGTAAGTACAGGGAATCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTGAAAGGTAATGTTTTCAAAAACAAGAGGGTCTTGATGGAGAGCATTCACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGTCTGATCAGTTTGAGGCTAAGCGTGCAAAGAACAAGGCTAGCAGGGAAAGGAAACTTGCTCGGAGGGAGGAGCGCTTAGCCCAAGTGAGTTCCAGTGGCCCCGTTGATAAGGCATCTACAGCACCCAGTGCCCCAGCACCGCAATCTGCTCAAGCGCCAAAGAAATCCAAGAAG 690 0.4957 NEPRVSFSPLHRQRRGNMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQVSSSGPVDKASTAPSAPAPQSAQAPKKSKK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00781 230 SUPERFAMILY Ribosomal protein L19 (L19e) 20 161 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lapu6g00781 230 SMART Ribosomal_L19e_2 20 163 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lapu6g00781 230 Coils Coil 178 198 - -
Lapu6g00781 230 CDD Ribosomal_L19e_E 21 184 IPR033935 GO:0003735|GO:0022625
Lapu6g00781 230 MobiDBLite consensus disorder prediction 166 197 - -
Lapu6g00781 230 MobiDBLite consensus disorder prediction 74 96 - -
Lapu6g00781 230 Pfam Ribosomal protein L19e 21 162 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lapu6g00781 230 FunFam Ribosomal protein L19 74 209 - -
Lapu6g00781 230 MobiDBLite consensus disorder prediction 204 222 - -
Lapu6g00781 230 PANTHER 60S RIBOSOMAL PROTEIN L19 18 202 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lapu6g00781 230 Gene3D - 74 208 - -
Lapu6g00781 230 Hamap 50S ribosomal protein L19e [rpl19e]. 20 166 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lapu6g00781 230 MobiDBLite consensus disorder prediction 166 230 - -
Lapu6g00781 230 MobiDBLite consensus disorder prediction 74 102 - -
Lapu6g00781 230 FunFam Ribosomal protein L19 18 73 - -
Lapu6g00781 230 Gene3D - 19 73 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lapu6g00781 230 ProSitePatterns Ribosomal protein L19e signature. 24 43 IPR023638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00781 Lapu-Chr6 8133983 8136788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00781 18 230 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.568 8.84e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00781 K02885 - gmx:100500446 344.354