Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00771 ATGAGTGCTGAAGCGCCGAAGCCAGCGCGACCCTGTGACTACTGTGGCCACTCCACGGCGGTTCTATACTGCAGAGCCGATTCAGCCAAACTCTGTTTCTCGTGCGACCGCGAGGTTCACTCCACCAACCAGCTCTTCTCGAAGCACACGCGTACTCTGCTCTGCGACGCATGCGATGATTCCCCTGCCACCATACTCTGTTCCACCGACACCTCTGTTCTCTGTCAGAATTGCGACTGGGAGAAGCACAACCCCGCGCTCTCCGACTCCCTTCACCAACGGAGGCCCCTCGAAGGTTTCACCGGTTGCCCTTCAGTCTCTGAACTCTTATCCGTCGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCACTGATGGGTTCCTCGGGTGTGAGATTGAAGGGCTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTGTTCTTCCGCTTCTTCTCATAGCTTTCAAGCCATGGAGGTTCCTCCTCTGCGTAAGAATCGGAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGCGAATTGGCCAAGTCTGAGCCATTGGATCTTGAACAATATGTGCAATCAGGAAACTTGTCCTCGGGTTTTGAACGAGACGTAGAGGTTGATATCTTTCTTTCTCATGAGTGGCATAGAGAAAGCAGTGAGCCGATGTATCAAGTTGTTCCTCCTGACCCATCATCGAGAACTTATACTGAAGAAATTCCAGTTAAACAATCTGCTTCTGCTGTTGGGGAAACTCATACCTATGGCGACAAGGGAGGGAATCCGTCCATTTCTCTCAAGTCTGAAACCCTACCAACTACTCCCAAAGCTGCTGCAATGGAGTTAACAAGCCAAGAAAGAGATTCTGCACTATTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGTGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCCAAGATGGAGGAGGGACACTAA 1062 0.4953 MSAEAPKPARPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPALSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSATDGFLGCEIEGLSDLFVWDAPSVVTLDDLICSSASSHSFQAMEVPPLRKNRKAACGRHREEILSQLRELAKSEPLDLEQYVQSGNLSSGFERDVEVDIFLSHEWHRESSEPMYQVVPPDPSSRTYTEEIPVKQSASAVGETHTYGDKGGNPSISLKSETLPTTPKAAAMELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEEGH* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00771 353 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 350 - -
Lapu6g00771 353 Pfam CCT motif 307 349 IPR010402 GO:0005515
Lapu6g00771 353 CDD Bbox1_BBX-like 11 54 - -
Lapu6g00771 353 SMART bboxneu5 7 54 IPR000315 GO:0008270
Lapu6g00771 353 SMART bboxneu5 55 97 IPR000315 GO:0008270
Lapu6g00771 353 MobiDBLite consensus disorder prediction 264 289 - -
Lapu6g00771 353 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Lapu6g00771 353 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Lapu6g00771 353 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Lapu6g00771 353 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Lapu6g00771 353 CDD Bbox1_BBX-like 54 97 - -
Lapu6g00771 353 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00771 Lapu-Chr6 8052762 8058124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00771 10 322 C2C2-CO-like Transcription Factor Family AT2G47890 39.577 5.07e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu6g00771 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00771 - - gmx:100817838 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00771 6 8052762 8058124 Lapu6g00771 6 8052762 8058124 ECH