Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00763 ATGGAAATTCCTGTGTATGATTTGCCTCCTAAGATCTTATGCAGGGTTGTGTGTGTTCAATTACAGGCCGAAACTTACACTGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGCCCAGGCCAAATAATCTTGGTTTAGAGATCGAAGACAATCATGTTCCTTCCAGAACTACAACCTACTCCTTTAGTAAGGTACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTGCACAGGAAATTGTTGCCAAGGACTTGCACGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGCGGTTGGAGCACATTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGCATGGAGAAGTTCGTGTTGGTATTCGTCGGGCAGTTAGACATCACAGCAATGCACCCCCGTCTTCATCTCTGATATCAGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTAGCCACAGGATCCATGTTCACAGTCTATTACCACCCTTGGACGAATCGCTTTGAATTTATTATTCCTCTGCAAAACTATTTGAAGTCAAGTGTACTCGACTTTTCAGTTGGAACGAGAGTACAAATGCAGTGTGATGTTGAAGAGTCTTTAAGAAGATATGCGGGTACGATAACTGGTAATGAAGTTATTGACAGCATTAGATGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCATTGGGATGCTATAGTAGATGCCTTCATGTACCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCGTGGAATCTGCCAGGGAGAAGCACAATCCTGTTCTCCCCAACCCCAAAAAGGCACATGTACTTAACCAGCGCCCTTTGCCTGGATTAAATGTCTTTGCCATGGATGATGCTGCTCAGAGTTCAGCCAAGCCGGCATCTCAGACTCAGAGAGCGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGTGTACTTCACGGCCATTGCAAAGGCCACCATCGACTGATGTAATCCACCCATCGAAGTTCTCAATCGGTGGCTCACAATTTGGAAAGGAGAATCTGAATCAGCTTCCCTCTCTTATGCAAGACCTTCTTCATAAATCTCTTGGAAGATCAACGTCATTACCACATGAAGACTTGTCAATTTCAAGTTCAAATTTAAGCTCCATTTGTTCAGAATCCCTGGGATGGCCACCTTCTGAATCTAGAAATGAAAATGATGCTCCATTTGGTCATCTTGGCAGTTGTAGTAGATACAAGCTTTTTGGAGTTAGCTTAATTGACCGCCAACCGGAGCTCCCTTCACCACAATTTGCTGGTTTCAGCAAGACTTCAAGTCTGCTTTCTAGTCCTCCAATGTGTGTTACCTCCGGGAAAACATGTAAGAAGTGTCGCTCTGTCAATAATCGTAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGATCTCACCCGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGAGGCAGCTTAGTCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGGGATTACCCATGGCAGGATTTCCAGTGTACGGTGCAAAAGATGATCATATGTCAAAAGGATGGTACTAACAATCTCAATCCAAGCTCCTCAGCAGATCCTCCAAGCCTTTAG 1818 0.4521 MEIPVYDLPPKILCRVVCVQLQAETYTDEVFAQVTLVPEPRPNNLGLEIEDNHVPSRTTTYSFSKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGEHGEVRVGIRRAVRHHSNAPPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWTNRFEFIIPLQNYLKSSVLDFSVGTRVQMQCDVEESLRRYAGTITGNEVIDSIRWPGSEWRCLKVHWDAIVDAFMYPERVCPWWIEPVESAREKHNPVLPNPKKAHVLNQRPLPGLNVFAMDDAAQSSAKPASQTQRADRDLQGQDYSGLCTSRPLQRPPSTDVIHPSKFSIGGSQFGKENLNQLPSLMQDLLHKSLGRSTSLPHEDLSISSSNLSSICSESLGWPPSESRNENDAPFGHLGSCSRYKLFGVSLIDRQPELPSPQFAGFSKTSSLLSSPPMCVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLTRFRGYDELIAELDSMFDFGGSLVNGSSGWHVTCIDDDGDMMFLRDYPWQDFQCTVQKMIICQKDGTNNLNPSSSADPPSL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00763 605 ProSiteProfiles PB1 domain profile. 506 589 IPR000270 GO:0005515
Lapu6g00763 605 SUPERFAMILY DNA-binding pseudobarrel domain 54 193 IPR015300 -
Lapu6g00763 605 SMART B3_2 63 165 IPR003340 GO:0003677
Lapu6g00763 605 Gene3D - 228 302 - -
Lapu6g00763 605 MobiDBLite consensus disorder prediction 332 373 - -
Lapu6g00763 605 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 590 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu6g00763 605 FunFam Auxin response factor 61 165 - -
Lapu6g00763 605 Pfam Auxin response factor 191 272 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu6g00763 605 FunFam Auxin response factor 228 300 - -
Lapu6g00763 605 Gene3D - 502 595 - -
Lapu6g00763 605 MobiDBLite consensus disorder prediction 335 367 - -
Lapu6g00763 605 CDD B3_DNA 62 163 IPR003340 GO:0003677
Lapu6g00763 605 SUPERFAMILY CAD & PB1 domains 509 581 - -
Lapu6g00763 605 Pfam B3 DNA binding domain 63 164 IPR003340 GO:0003677
Lapu6g00763 605 ProSiteProfiles B3 DNA-binding domain profile. 63 165 IPR003340 GO:0003677
Lapu6g00763 605 Gene3D - 61 165 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00763 Lapu-Chr6 7964269 7972947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00763 2 595 B3 DNA Binding Superfamily AT3G61830 40.234 4.42e-121 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu6g00763 B3 2.8e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00763 - - gmx:100802387 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00763 6 7964269 7972947 Lapu6g00763 6 7964269 7972947 ECH