Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00726 ATGGAAAGCAATACAGAAAGTCAAATGATATCGGCTGCGGCCTTTGTTGAAGGGGGGATTCAAGACTCCTGTAATGATGCTTGCAGCATATGTCTTGAAGACTTTTGTGCAAGTGATCCTTCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCCAACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAGGAGAGAAAGTTGAGGGTTACCCCATCAAGAAATGCTACTATTTTTCATCACCCTGCGTTAAGTAATTTTGAATTGCAGCAATTGCGCATGAGTGTAAATGATGTTGATTTTGAAGACCAAATTATTCAACATTTAGCTATTGCTGCAGCGATGAGGAGAGCGAACCAACTTAGTCATAGGGCAGGACAGCGAGCTCGCTCATCAGCTCATGGTTATCCACACTCATCAGTGTTATCTAATCACACTCTAGCATCTGCATCGAGTTCTGATTCAGCTGCTGAAGGGGAAAATGACCAAATGAGAATTCCTAATACAAGTCCATCTACCCCTATAAAATCCGAGAGAAATAAAGCATTGCAACAGATCCTGCGCATTCGAACTCAAAGCTCTTCTTCAGCTTCTGGATCTACTCGTGATAGAGACTCTACTACTCGCTCTTCATCAGTAAACCAAGATAGAGCAGAGCCATCAGAATTCCAGTCACATTCTGATTCGCTGCGGTCCAGATTCAGTGCGGTTTCCACGAGATACAAAGAATCAATCTCAAAGGGCGCAAGGGGATGGAAGGAAAGGTTGTTCTCTCGTAGTTGTTCCATGTCAGCACTTGGTTCAGAAACAAGGAGGAGAGAGATGAATGATGAGTGTGCTAGTGTATCCCGATTAAAGGAATCACTTGAAACTAGTGAAAACAGTAAAGCTGTGGGTACTACTTCGTCCAGTCATATGGAGGATTGTTCCATTGGAGAGGTGAGCAACCAGAACGATGTTGAAGCTAGCGGGGAGAACTCTTCACATGAGGACAATACTCCATCTGCTTGTTCTGCTACCTCACATTTAAATTGA 1107 0.4363 MESNTESQMISAAAFVEGGIQDSCNDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSSQCPMCWQSISLKDPTSQELFEAVEQERKLRVTPSRNATIFHHPALSNFELQQLRMSVNDVDFEDQIIQHLAIAAAMRRANQLSHRAGQRARSSAHGYPHSSVLSNHTLASASSSDSAAEGENDQMRIPNTSPSTPIKSERNKALQQILRIRTQSSSSASGSTRDRDSTTRSSSVNQDRAEPSEFQSHSDSLRSRFSAVSTRYKESISKGARGWKERLFSRSCSMSALGSETRRREMNDECASVSRLKESLETSENSKAVGTTSSSHMEDCSIGEVSNQNDVEASGENSSHEDNTPSACSATSHLN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00726 368 SUPERFAMILY RING/U-box 22 76 - -
Lapu6g00726 368 MobiDBLite consensus disorder prediction 146 165 - -
Lapu6g00726 368 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Lapu6g00726 368 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 77 - -
Lapu6g00726 368 SMART ring_2 28 68 IPR001841 -
Lapu6g00726 368 MobiDBLite consensus disorder prediction 171 269 - -
Lapu6g00726 368 MobiDBLite consensus disorder prediction 309 368 - -
Lapu6g00726 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 77 IPR013083 -
Lapu6g00726 368 MobiDBLite consensus disorder prediction 251 266 - -
Lapu6g00726 368 Pfam Ring finger domain 27 68 IPR001841 -
Lapu6g00726 368 MobiDBLite consensus disorder prediction 171 244 - -
Lapu6g00726 368 FunFam E3 ubiquitin-protein ligase RHF2A 1 102 - -
Lapu6g00726 368 MobiDBLite consensus disorder prediction 307 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00726 Lapu-Chr6 7622405 7627174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00726 26 76 C3H Transcription Factor Family AT4G00335 47.059 2.17e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00726 K19043 - gmx:100800419 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00726 6 7622405 7627174 Lapu6g00726 6 7622405 7627174 ECH