Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00723 ATGGGAAACAATTGTGTCGGGTCAAAAACCTCGGAATATTCACTGTTTTCCTGTGTTCATCGGAGTTCATTCTTGTGGCTTCATCATCACCAAACGAGGGTAGTCACAGAAATTTCGGATGCACCTTCACAAGTGACTAAAGTTGAAGACACAACTGCTCTAGAGAATGTTCAGGAAAAGCCTCCACGAGTGGTGAAAATTAACAAAGAGATTAGCATGCCTTCAGAGCCTGCAAATAAAAAAACACTCCATAAAGTCAAGAGGGTAGCAATAGGGCTTCAAGAAGAGTCAATTTTGAAGAGAAAAAGTGGTCACTTTAAGGAGTTCTATAATTTGGGACAAGAACTTGGAAAGGGACAATATGGAACAACGTTCCTCTGTACTGAGAAAGCAACTGGGAAAAAGTACGCTTGCAAGTCCATTCCAAAAGTGAAACTGTTGATAGATGAAGACGTGGAAGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAGGGGTGTCCTAATGTGATATCAATTAAAGGAGCTTATGAGGATGGTGTTGCAGTTCATGTTGTGATGGAGTTATGTGGAGGGGGTGAACTTTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTTAGTGTTATAGAGGGTTGCCACTCCCTTGGGGTGATGCATCGTGATCTTAAACCTGAGAATTTTCTTTTTGTTGATGGCAATGAAGATTCCACACTTAAGGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGACACTTTTAGGGACGTGGTTGGAAGTCCTTATTATATTGCACCTGAAGTTCTACGCAGGCATTATGGTCCAGAAGCTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTTTTATGTGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTAGATTTCACTTCAGATCCTTGGCCGAATATCTCTGAAAGTGCTAGAGACTTGGTTAGTAAGATGCTTGTCAGAGATCCTAGAAAACGGATAACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAAGTCGATGGAATTGCTCCAGACAAACCTCTTGATTTTGCAGTTTCGAGTCGCCTGAAGCAGTTTTCTGTAATGAACAAGCTAAAGAAAATGGCTCTTAGAGTTATTGCATTGAATCTCTCAGAAGAAGAAATTTCTGAACTGAAAGTAACGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTAGAAAAGCTCAAGGTTGGATTCAAAATGCTTGGTAATAATCTCAGTGAGCCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGATATCAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAGAGAAGATCATTTAGTTGCAGCTTTTTCATTTTTTGATAGAAGTGGAAGTGGCTACATTACTCGAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGTATGGAGAATGTATGCTTCGAGGAAATTATCCAAGAAGCTGATCAGAATAACGATGGCCGAATAGACTACGATGAATTCGTGGCTATGATGCTGAGAGGCAATGCAGATTTAGGTAGAAACAGGATAAAGGGTGGCACTGATTTTAGCATTGGATTTAGGGAGGCACTATCAGTGTGTTGA 1728 0.4039 MGNNCVGSKTSEYSLFSCVHRSSFLWLHHHQTRVVTEISDAPSQVTKVEDTTALENVQEKPPRVVKINKEISMPSEPANKKTLHKVKRVAIGLQEESILKRKSGHFKEFYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLLIDEDVEDVRREIEIMHHLEGCPNVISIKGAYEDGVAVHVVMELCGGGELFDRIVERGHYTERKAAKLARTIVSVIEGCHSLGVMHRDLKPENFLFVDGNEDSTLKAIDFGMSVFFKPGDTFRDVVGSPYYIAPEVLRRHYGPEADVWSAGVIIYILLCGTPPFWGESEQEIFEEVLHGDLDFTSDPWPNISESARDLVSKMLVRDPRKRITAHEVLRHPWIQVDGIAPDKPLDFAVSSRLKQFSVMNKLKKMALRVIALNLSEEEISELKVTFKMIDTDNSGQITLEKLKVGFKMLGNNLSEPEILDLMQAADVDISGTIDYGEFIAATLHLNKVDREDHLVAAFSFFDRSGSGYITRDELQKACEEFGMENVCFEEIIQEADQNNDGRIDYDEFVAMMLRGNADLGRNRIKGGTDFSIGFREALSVC* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00723 575 FunFam Calcium-dependent protein kinase 1 isoform A 112 195 - -
Lapu6g00723 575 Pfam Protein kinase domain 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00723 575 CDD EFh 487 546 IPR002048 GO:0005509
Lapu6g00723 575 CDD STKc_CAMK 109 367 - -
Lapu6g00723 575 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Lapu6g00723 575 Pfam EF-hand domain pair 488 546 IPR002048 GO:0005509
Lapu6g00723 575 Pfam EF-hand domain pair 415 476 IPR002048 GO:0005509
Lapu6g00723 575 CDD EFh 415 475 IPR002048 GO:0005509
Lapu6g00723 575 FunFam Calcium-dependent protein kinase 1 376 550 - -
Lapu6g00723 575 ProSiteProfiles Protein kinase domain profile. 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00723 575 Gene3D Phosphorylase Kinase; domain 1 89 185 - -
Lapu6g00723 575 SMART efh_1 415 443 IPR002048 GO:0005509
Lapu6g00723 575 SMART efh_1 451 479 IPR002048 GO:0005509
Lapu6g00723 575 SMART efh_1 521 549 IPR002048 GO:0005509
Lapu6g00723 575 SMART efh_1 487 515 IPR002048 GO:0005509
Lapu6g00723 575 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Lapu6g00723 575 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Lapu6g00723 575 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Lapu6g00723 575 FunFam Calcium-dependent protein kinase SK5 196 380 - -
Lapu6g00723 575 SUPERFAMILY EF-hand 397 548 IPR011992 -
Lapu6g00723 575 ProSiteProfiles EF-hand calcium-binding domain profile. 522 552 IPR002048 GO:0005509
Lapu6g00723 575 SMART serkin_6 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00723 575 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Lapu6g00723 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Lapu6g00723 575 Gene3D - 385 477 - -
Lapu6g00723 575 Gene3D Transferase(Phosphotransferase) domain 1 186 378 - -
Lapu6g00723 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 542 - -
Lapu6g00723 575 Gene3D - 394 546 - -
Lapu6g00723 575 SUPERFAMILY Protein kinase-like (PK-like) 109 369 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00723 Lapu-Chr6 7599128 7603226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00723 1 569 EF-hand Containing Proteins AT5G04870 62.316 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu6g00723 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00723 K13412 - gmx:100814475 976.467