Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00716 ATGAGCAGCAACACTGCAGTTAATTCCCCTGGATTCCTGGGCTCAAGCAACATCGGTGGCTATAGTTATGGCATAGGAATCTCCATTGGAATTCTCTTGCTCATCATAACCATCACTCTAACTTCCTACTTCTGCACTAGAACACGTGTCTCTTTTGCTCCAGCTACTAGGAACAGGAGACTCACCCCAAATGTTCTTCAACCACAGCACTCCATAGTTGATGTAAGTTTAGATGAAGCCACGATTCTGAGTTATCCAACCCTGCTGTACTCTGAAGCCAAGGTCCAGAAGTCTGATTCCACTGCAACTTGTTGCTCCATTTGTTTGGCAGATTACAAGGGTACTGATATGCTCAGGATGCTACCTGATTGTGGCCACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACGCCGCTGTCAACTCCTCTGGCTGAAGTGGTTCCATTGGCTAGCAGACATGATTCATAG 516 0.4612 MSSNTAVNSPGFLGSSNIGGYSYGIGISIGILLLIITITLTSYFCTRTRVSFAPATRNRRLTPNVLQPQHSIVDVSLDEATILSYPTLLYSEAKVQKSDSTATCCSICLADYKGTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRHDS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00716 171 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Lapu6g00716 171 SUPERFAMILY RING/U-box 85 152 - -
Lapu6g00716 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 161 IPR045899 -
Lapu6g00716 171 SMART ring_2 105 146 IPR001841 -
Lapu6g00716 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Lapu6g00716 171 Pfam Ring finger domain 105 147 IPR001841 -
Lapu6g00716 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00716 Lapu-Chr6 7546135 7546650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00716 11 167 C3H Transcription Factor Family AT2G35910 65.409 7.07e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00716 - - gmx:100811799 288.5