Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00715 ATGCCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGACAAGAGAAGCTCGTTACAAAAAAAATCGAGAAAATTTATTGAAGAAGGTGGAAGATCTTACCACTCTTTGTGATGTGAATGCGTGTGTAATCATCTATGGTCCTGGGGATAACGTGCCAACTGTGTGGCCATCCCAGGAGATTGCTAAAGAGTTGATCAACAAGTTTGAGAATGCTCCATGGCCAGATCGGGTGAAAAAGAAGGTTACTCCTCAAGCTTATATCGAGCAAATGAATAAAAAGATTGAAAGTCAAGTTCTGAAACTCAGGATGAAGAACGATGAGAAAGACATGTTGAATCTCATGCATAAAATACATGATGGTAAGTCTTTATCAGATCATGATGCTAGTGATATATGTCGTTTACTTTGTTATGTGGAGGAAAAATTGAAGTGCATTGGAATAAAAGTTGACCTTTCTAAACAACAGTTGTCGACTAAACCTCCAACACCAGCAGTTTCTTTTCCTCCACATAATGATATTGATTCTTGTGCTGATATAGATGAACAAGTTTTTCAACAACAATCATCCTTAGATTCAATGAAAGAAACTAGTCCAATGAAAAGTGATTCTGGTAATAATGTAGGGAGCAATACGGGACTACCACCACTACAACCACACACACATCTTAGTGATGATGATAAAGTTAATTTTGAAAGTTTGAATTTGGATGATATTGATATGGTGTTACCTTCAGGAAATTTTAATCATGTGATTGATGATGATGACTTAGGGTTTGAGATGTTGCCTCATGATAGTTTTTTAGGTGTTTGTGATAATAGTGATTTAGGGCTTTTATATGGGAGTTCTTCAGGTGAAATTAGAGGGAATGAAATATGGTCATCTTATGAAAGTTTTGGAGACATAAGTGAGAGTGATATGATGTTGCCCTTCAACAACAATCTGCAAGACAACATTAATGGTACTTTCATGGGAACAAATGTTGAAATTCAAAGTGTGTCCATTAACAATGTAGAGTTGTGGGATGATCATCAAAGCACCTTTGGAGCCAAGAATGATGGAGCTATCTTGAGGAATTCCATAACAAACTTTGTTAGCACTACCAGTGGATTAAACATGAACTCTTGA 1137 0.3624 MPRRKKVTLKLIENFVTREARYKKNRENLLKKVEDLTTLCDVNACVIIYGPGDNVPTVWPSQEIAKELINKFENAPWPDRVKKKVTPQAYIEQMNKKIESQVLKLRMKNDEKDMLNLMHKIHDGKSLSDHDASDICRLLCYVEEKLKCIGIKVDLSKQQLSTKPPTPAVSFPPHNDIDSCADIDEQVFQQQSSLDSMKETSPMKSDSGNNVGSNTGLPPLQPHTHLSDDDKVNFESLNLDDIDMVLPSGNFNHVIDDDDLGFEMLPHDSFLGVCDNSDLGLLYGSSSGEIRGNEIWSSYESFGDISESDMMLPFNNNLQDNINGTFMGTNVEIQSVSINNVELWDDHQSTFGAKNDGAILRNSITNFVSTTSGLNMNS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00715 378 Coils Coil 91 111 - -
Lapu6g00715 378 Gene3D - 16 99 IPR036879 GO:0003677|GO:0046983
Lapu6g00715 378 MobiDBLite consensus disorder prediction 191 220 - -
Lapu6g00715 378 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 55 IPR002100 GO:0003677|GO:0046983
Lapu6g00715 378 SUPERFAMILY SRF-like 4 93 IPR036879 GO:0003677|GO:0046983
Lapu6g00715 378 Coils Coil 19 39 - -
Lapu6g00715 378 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Lapu6g00715 378 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Lapu6g00715 378 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Lapu6g00715 378 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Lapu6g00715 378 CDD MADS_SRF_like 4 70 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu6g00715 378 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00715 Lapu-Chr6 7539768 7540904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00715 4 170 Type I MADS-box Gene Family AT1G65300 31.176 1.08e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g00715 SRF-TF 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00715 - - var:108328520 522.702