Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00714 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACACAATTTTATGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGGAGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTGCCTAACTGCATAGACCAACTTGCTGCCAGTAAGCCTTTGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGACGCGCAAACGCTTCAGACTACCATATCACTGCAGCCATCTCTAGCTGATTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACAGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTCAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTATCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTGCTTGATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACAAGGAAATCTGCTAATGGAAATGGCAAAACTGGAAATAATGTGCATGAAACTGTTGGTGAACGATTGCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCGGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGACGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGATCGTCCTAACATCTGGTCTAGGCAATTCATCCCTGGCTCATACTTTGGCAATCCATCCTTGGCTCATGGTAACTGTAGGCAACTCATCCTTGGCTCAATGTACCTGTAG 1080 0.4565 MAMQTVYLKEHEGNAHNFMGALSSAASAPWWSAFGSQPVHGGESCGQMKPFSLELPNCIDQLAASKPLARGAEQVLGKGHTTQFTIFPDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSANGNGKTGNNVHETVGERLHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKDRPNIWSRQFIPGSYFGNPSLAHGNCRQLILGSMYL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00714 359 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 88 277 IPR001289 GO:0003700|GO:0006355
Lapu6g00714 359 MobiDBLite consensus disorder prediction 214 272 - -
Lapu6g00714 359 ProSiteProfiles NF-YA/HAP2 family profile. 154 214 IPR001289 GO:0003700|GO:0006355
Lapu6g00714 359 Gene3D - 155 215 - -
Lapu6g00714 359 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 157 211 IPR001289 GO:0003700|GO:0006355
Lapu6g00714 359 SMART cbf3 153 214 IPR001289 GO:0003700|GO:0006355
Lapu6g00714 359 MobiDBLite consensus disorder prediction 203 272 - -
Lapu6g00714 359 PRINTS CCAAT-binding transcription factor subunit B signature 188 211 IPR001289 GO:0003700|GO:0006355
Lapu6g00714 359 PRINTS CCAAT-binding transcription factor subunit B signature 157 179 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00714 Lapu-Chr6 7518766 7523899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00714 1 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.220 5.32e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu6g00714 CBFB_NFYA 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00714 K08064 - gmx:100527677 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00714 6 7518766 7523899 Lapu7g00132 7 1446857 1450648 PCT