Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00713 ATGGCTGCTGCAGGTTCCATTTCCTCTCCCATCTGCAACAGAATATACAACTTTTCCTTCACCCACTCTTCCATTTCACTCACCACCAACTTCCCTCAAAGACCCATATTCCAAAAACCACTCAATCTCAACCTCAAGTCCCAAAGTTTCAGTCTTTCATTTCTCCCACTTCACCGTCTGTCCCCACCTTCTGCCGCCTTCGATGGGTTGGAAGTGGGTCAAGACATCACAGAGTCCCAAGACGAACCAGAATCAAAACCAGGAACAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCAAAAGGTTTCAGACTCTAACGATAACGATGCTGGGAGGATCTACATTGGAAACTTGCCATATTCCATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCTGGCACAGTGATGTCTGTTGAGATTGTGTATGATCGTGTCACAGGTAGAAGCAGGGGATTTGCATTTGTTACAATGGGAAGTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCCAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGATTGGTAATGGGGGCAAAAATAAGGAACAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTACTGTGGAAACCTTGGCTGGGGAGTCAACTCACAGGGTCTTAGAGAGGCTTTTGCTGAGCAGCCAGGAATATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGCTTCGGGTTTGTTTCTTTTACAACTGCCGAGTCTGCGGCAGCTGCCTTGGACTTTATGAATGGTGTGGAAGTAGAAGGTCGTCCATTGCGGTTGAATATGGCTGAAGCGAGGACACCATCATCTCCTCCATTAACTGAGGAGAATGCAGGAAATAATGTTGAAAGCTCGGAATTGGTCTCAAGTTTCAGAACATAA 966 0.4627 MAAAGSISSPICNRIYNFSFTHSSISLTTNFPQRPIFQKPLNLNLKSQSFSLSFLPLHRLSPPSAAFDGLEVGQDITESQDEPESKPGTETSEKTEQEEEQKVSDSNDNDAGRIYIGNLPYSITNSQLAELFGEAGTVMSVEIVYDRVTGRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKIRNNYRGFVDSPHKIYCGNLGWGVNSQGLREAFAEQPGILSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGVEVEGRPLRLNMAEARTPSSPPLTEENAGNNVESSELVSSFRT* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00713 321 MobiDBLite consensus disorder prediction 293 321 - -
Lapu6g00713 321 PANTHER OS02G0815200 PROTEIN 46 296 - -
Lapu6g00713 321 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Lapu6g00713 321 Gene3D - 71 195 IPR012677 -
Lapu6g00713 321 Gene3D - 202 300 IPR012677 -
Lapu6g00713 321 CDD RRM2_NsCP33_like 216 291 - -
Lapu6g00713 321 MobiDBLite consensus disorder prediction 76 111 - -
Lapu6g00713 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 287 IPR000504 GO:0003723
Lapu6g00713 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Lapu6g00713 321 SMART rrm1_1 216 289 IPR000504 GO:0003723
Lapu6g00713 321 SMART rrm1_1 113 186 IPR000504 GO:0003723
Lapu6g00713 321 SUPERFAMILY RNA-binding domain, RBD 105 188 IPR035979 GO:0003676
Lapu6g00713 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Lapu6g00713 321 MobiDBLite consensus disorder prediction 295 321 - -
Lapu6g00713 321 CDD RRM1_PSRP2_like 113 192 - -
Lapu6g00713 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Lapu6g00713 321 MobiDBLite consensus disorder prediction 79 107 - -
Lapu6g00713 321 FunFam 33 kDa ribonucleoprotein, chloroplastic 197 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00713 Lapu-Chr6 7512359 7517903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00713 99 294 Eukaryotic Initiation Factors Gene Family AT3G16380 33.500 9.93e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00713 - - gmx:100814852 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00713 6 7512359 7517903 Lapu7g01206 7 25403067 25406561 PCT