Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00711 ATGAACGACTTGTTATCGAGTTTGTTCTCGAAGGGAAAGCAACAACAAGAAGGCCAGCATGTAATCGAAATAACACAAGGTGGCATGGACTTGGACAAGTTCTTCCAAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAGCTAGAGCGTCTCCACTTAAGTCTCCGAGCCTCAAACCAAAACGGGAAAGCGCTTCACAGCCCGAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTGGCTCTTGCTCTCACCAAAGCCAAGCTGGTGAAGACTCGCTTGGAGGCTCTCCGCCGCGCCAACCAAGCCACCCTTTCCATGCCCGATTGTGGACCCGGTTCGTACTCCGACCGGACCCGAACCGCACTGGTCGGAGCCTTGACCAAGAATCTGAAACAGTCCATGGAGAGTTTCAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTTCAACGTAGATACTACGCTGTCACCGGAGAAAACCCTGATCATGAAACCATTGATCTCCTCATCTCTACGGGTGAGAGTGAAACTTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTAAAAGAGATAGAGAGAAATCTACACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAACATCAGGGTGAACAGTTGGATGACATAGAGAGCCACATGGCGCTTGCAAATTCCTTCGTGAGCAAAGGGGTGCATCACTTGCAGGTTGTGAAGAATCATCAGAAGAACACCCGTAACTTGACCTGTTTTGCCATACTCCTCTTCATTATCATGTTGGTCATAGTTCTCCCAATTGTTTTCAGAAATTGA 888 0.4989 MNDLLSSLFSKGKQQQEGQHVIEITQGGMDLDKFFQEVESVKEELKELERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTRLEALRRANQATLSMPDCGPGSYSDRTRTALVGALTKNLKQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDHETIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHGTVKEIERNLHELHQVFLDMAVLVQHQGEQLDDIESHMALANSFVSKGVHHLQVVKNHQKNTRNLTCFAILLFIIMLVIVLPIVFRN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00711 295 CDD SynN 31 188 IPR006011 GO:0016020
Lapu6g00711 295 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu6g00711 295 FunFam Syntaxin 132 194 293 - -
Lapu6g00711 295 Coils Coil 31 58 - -
Lapu6g00711 295 Gene3D - 190 293 - -
Lapu6g00711 295 SUPERFAMILY t-snare proteins 28 256 IPR010989 GO:0016020|GO:0016192
Lapu6g00711 295 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Lapu6g00711 295 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Lapu6g00711 295 PANTHER SYNTAXIN 27 283 IPR045242 -
Lapu6g00711 295 CDD SNARE_syntaxin1-like 200 261 - -
Lapu6g00711 295 SMART tSNARE_6 196 263 IPR000727 -
Lapu6g00711 295 SMART SynN_4 26 152 IPR006011 GO:0016020
Lapu6g00711 295 Gene3D - 31 158 - -
Lapu6g00711 295 Pfam SNARE domain 237 289 IPR000727 -
Lapu6g00711 295 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00711 Lapu-Chr6 7489916 7501054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00711 25 275 SNARE and Associated Proteins AT3G11820 64.143 9.09e-118 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00711 K08486 - gmx:100790221 483.026