Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00710 ATGCACGACTTGTTGTCCACCACCTCCTCCTGCCGCAGCCACCGGTTTACGCCATCGCCGGATCACAGTGTCATCGAGATGGCGGGCGGCGACGACGACGACGGAGCAACGAGCCTGGCCAAGTACTTCGGCAACGTGGATGCAATAACGGAAGAGCTGAACGAGGTGGAGCGGGTGAAGCAGAGTCTGAAGAGGTCTCATGAACAAGGCAAGACCCTTCACAATGGTAAAGCCGTGAAGGACCTTCGCTTCGCCATGGAAGCTGACGTGGCACTCGCTCTCGGGACCGCGAAGCGCGTCAGGTTTCAGTTGGAGGCGCTCGAACGCGCCAACGCCGATCACCGGAGCCTCCCTGGTCGTGGACCGGGTTCGTCCTCCGACCGGTCGCGAACCTCCGTGGTGATATCCCTGAGGAAGAAGCTGAAGGACTCCTTGGACGGCTTCAATGAACTGCGTCACCAGATAAACGCGGAACACCGTGAGACCGTTCAACGCCAATACTTTACCGTCACCGGCAATAATCCCGACGACAAAACCCTCGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTACTACAAAGAGCCATTGAAGAGCAGGGTAGGGGAAGAATTGAGGACATTGTTGATGAAATGAAAGAGAGGCATGATGGGATGAAAGAGTTGGAGAAGAATCTGAAGGAGTTGCATCAGGTGTTCCTTGACATGACAGTGCTGATTGAAGCTCAAGGGGAGCAATTGGATGATATAGGGAACCACTTGGCAAGAGCAAACTCCTTCGTCAGGAATGGGACTCAGAATCTGGAAACTGCAAGGAAGGAGCAGAAAAACCACCGCAAATGGGGCTATTGTGCTATTATCTTTCTTGTAGCTATTGTCTTGTTTGTGGTGCTCTTTTTTGTAAGACCATGGCAAAAATAA 921 0.5266 MHDLLSTTSSCRSHRFTPSPDHSVIEMAGGDDDDGATSLAKYFGNVDAITEELNEVERVKQSLKRSHEQGKTLHNGKAVKDLRFAMEADVALALGTAKRVRFQLEALERANADHRSLPGRGPGSSSDRSRTSVVISLRKKLKDSLDGFNELRHQINAEHRETVQRQYFTVTGNNPDDKTLDLLISSGESENLLQRAIEEQGRGRIEDIVDEMKERHDGMKELEKNLKELHQVFLDMTVLIEAQGEQLDDIGNHLARANSFVRNGTQNLETARKEQKNHRKWGYCAIIFLVAIVLFVVLFFVRPWQK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00710 306 CDD SynN 39 196 IPR006011 GO:0016020
Lapu6g00710 306 MobiDBLite consensus disorder prediction 1 17 - -
Lapu6g00710 306 Coils Coil 46 69 - -
Lapu6g00710 306 MobiDBLite consensus disorder prediction 113 132 - -
Lapu6g00710 306 Gene3D - 36 169 - -
Lapu6g00710 306 ProSitePatterns Syntaxin / epimorphin family signature. 215 254 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu6g00710 306 SUPERFAMILY t-snare proteins 40 264 IPR010989 GO:0016020|GO:0016192
Lapu6g00710 306 FunFam Syntaxin 132 202 302 - -
Lapu6g00710 306 CDD SNARE_syntaxin1-like 209 270 - -
Lapu6g00710 306 MobiDBLite consensus disorder prediction 1 24 - -
Lapu6g00710 306 Gene3D - 204 302 - -
Lapu6g00710 306 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lapu6g00710 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Lapu6g00710 306 Pfam SNARE domain 245 297 IPR000727 -
Lapu6g00710 306 PANTHER SYNTAXIN 53 290 IPR045242 -
Lapu6g00710 306 SMART tSNARE_6 204 271 IPR000727 -
Lapu6g00710 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 36 166 - -
Lapu6g00710 306 SMART SynN_4 34 160 IPR006011 GO:0016020
Lapu6g00710 306 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00710 Lapu-Chr6 7489916 7501054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00710 27 304 SNARE and Associated Proteins AT3G11820 60.072 2.27e-112 326