Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00707 ATGGACAACGAGATCGATGTCCCTTCGTTCTTCCTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCAGTGACGGTTTCCACGGGCATCACCTACGACCGTGAAAACATCGAAACGTGGCTGTTTTCTAAGAAAAATACCACATGCCCCATGACCAAACAACCCTTGTTAGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATCCAAGCATGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCTGTTAACAAGACTCAGATTTCGAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCGTATGCCTCCGGAGACTCAAGTCCATCGCTTCAGGAAGCGAGACTAATAAGCGATGCATGGAAGCTGCGGGTGCTGTTGAGTTCCTAGCATCGATTGTAATGAACAACAACGATTCTTCAAATGGGGCTGACCCAAATGATGGATCTGGATTCGAGTTGAAAACAACTGCTACCGACGAAGCATTGAGCCTGCTTCACACTCTTCATTTATCTGAACAAGGGTTGAAGACTCTTCTAAGCTTCAGAAACGGAGAGTTTATTGAGTCTTTGACAAGAGTCATGCAGAAGGGGTTCTTTGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCGGATCCAGTGCAATTGTTGCATCTAAGACAAGAACTTTTCGTGGAACTTGTACAAGTCTTGAAGGATCAGATTTCAACAAAGACATCAAAAGATATTCTTCAAATCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAGGCTGTCGAAGCAGGAATGGTTCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGTGAGATGATGCTGGTCCTGTTGGAGATACTGTGCCAGTGTGCTGAGGGAAGAGCAGAACTACTGAGTCACGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATCCTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTGTGTGTTTCCAAGTTCTCTGCGACTCCACATGTTATTCAAGAAATGCTGAAGCTGGGTGTGGTGGTGAAACTATGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCTAAGGAAAAGGCAAGAGAGATACTCAAATTGCATGCTCGGGCATGGAAGAATTCTCCATGCATACCGAACAATTTGCTTTCTTCATACCCGGCTTATGCGTGA 1254 0.4545 MDNEIDVPSFFLCPISLEIMKDPVTVSTGITYDRENIETWLFSKKNTTCPMTKQPLLDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKTQISKLLKDASHSPLVCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNDSSNGADPNDGSGFELKTTATDEALSLLHTLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLRQELFVELVQVLKDQISTKTSKDILQILIQFSPWGRNRIKAVEAGMVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLCVSKFSATPHVIQEMLKLGVVVKLCLVLQVDSGNKAKEKAREILKLHARAWKNSPCIPNNLLSSYPAYA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00707 417 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Lapu6g00707 417 CDD RING-Ubox_PUB 8 58 IPR045210 -
Lapu6g00707 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lapu6g00707 417 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Lapu6g00707 417 Gene3D - 99 403 IPR011989 -
Lapu6g00707 417 SUPERFAMILY RING/U-box 4 83 - -
Lapu6g00707 417 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Lapu6g00707 417 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Lapu6g00707 417 SUPERFAMILY ARM repeat 112 392 IPR016024 -
Lapu6g00707 417 FunFam RING-type E3 ubiquitin transferase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00707 Lapu-Chr6 7442138 7443391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00707 1 415 U-box Gene Family AT3G52450 57.569 1.04e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00707 - - gmx:100811258 743.036