Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00706 ATGCATGACCCTGTAACCACTGTAACAGGCATCACATACGACAGAGAAAGCATTGAGCGCTGGTTATTCAACAACAAAAACCCCACATGCCCACTCACAAGACAACATCTCCCTAAAGACTCTGACTTAACCCCAAATCACACCCTTCTCCGTCTAATCCAAGCTTGGTGCACTCAAAATGGTGTTCATAGGATTTCCACCCCTAAGCCATCACTCAACAAGTTTCAAGTCCTTAAACTTCTCAAAGACCTCAAGGACCCCAACTTGCAACTCATAAAGATCTTGGAGTTGAAGTTTCTAGCATCTCAGAATGAGAGAAATACTAAGTGTTTGCTTCAGGCTGGTGCATCAAAGGCCATGATCCTGTTCTTGTTGACTTGTTTAAGAAAAGGTCAATTTGATGAGAGTGTAGAAGAAGCCTTTAGTTTACTGGAGCTTCTTGATGTGCCAGAAGAGGACATCAAGGTTCTTCTAGAGGAAAACGATCAGATATTTGATAACCTAACGTGGGTTTTGGATTGTGAGGTGGAAAAACATTCAATTGCTGTGAAGTCCCATGCAGTGATGTTACTCAACACAATCATGCAAAAGTCTAGCTCCAGTTTAATGGAGAGACTTAAACCTGAAATGTTTGAAAAAATTGTGAAGATTTTACGATATGGAACTACCCAACAAGGAATGAATGCTGCTCTTCGTGTCATGTTAAATGCGTGCCACTGGGGGAGAAACCGGATCATGATGGTTGAAAGTGGTGCAGTTTTTGAACTCATAGAGATAGAGTTGTTGGGGACACGTGAAAAGAGCACCACGGAACTCATCATGGAGATACTGTTTCATCTGTGTTCCTGTGCTGACGGAAGAGCTCAGTTTGTGAGTCACAAAGGGGCCATTGCTTTGTTGACGGAGAGAATCTTCACGGTTTCGAAAGCTGTGGATGGCAGAGCTGTGTTTATTCTTTCATTGGTGTTGTCTACGTTCTCTGCCACACGTGACATAGTTGAGGAGATGGTGGAGTTTGGAACTGTGTCGAAGCTTTGTAGGTTGGTTCAGAGTGATAATCATTGCACTTATCTGAAAGACAAAGCAAGGGAAATTCTCAAGTCTCATGCTAATGTTTGGAAACGTTCTCCATGCATTTCTCATAGTCAGATAAGAACTTTTACAGTATATGTGTATGCTCGTAAGAGAAATGTTTTTGTTTTTCAGCAATAG 1212 0.4191 MHDPVTTVTGITYDRESIERWLFNNKNPTCPLTRQHLPKDSDLTPNHTLLRLIQAWCTQNGVHRISTPKPSLNKFQVLKLLKDLKDPNLQLIKILELKFLASQNERNTKCLLQAGASKAMILFLLTCLRKGQFDESVEEAFSLLELLDVPEEDIKVLLEENDQIFDNLTWVLDCEVEKHSIAVKSHAVMLLNTIMQKSSSSLMERLKPEMFEKIVKILRYGTTQQGMNAALRVMLNACHWGRNRIMMVESGAVFELIEIELLGTREKSTTELIMEILFHLCSCADGRAQFVSHKGAIALLTERIFTVSKAVDGRAVFILSLVLSTFSATRDIVEEMVEFGTVSKLCRLVQSDNHCTYLKDKAREILKSHANVWKRSPCISHSQIRTFTVYVYARKRNVFVFQQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00706 403 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Lapu6g00706 403 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Lapu6g00706 403 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Lapu6g00706 403 PANTHER WDSAM1 PROTEIN 1 380 IPR045185 GO:0061630
Lapu6g00706 403 SUPERFAMILY RING/U-box 1 66 - -
Lapu6g00706 403 SUPERFAMILY ARM repeat 78 355 IPR016024 -
Lapu6g00706 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Lapu6g00706 403 Gene3D - 75 373 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00706 Lapu-Chr6 7427782 7429214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00706 1 379 U-box Gene Family AT3G11840 39.443 4.03e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00706 - - cill:122277374 436.802