Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00704 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTACATCCACTACTCCGACGCGCCGTCGCAGCCCCCGCCCTCACACGCTGCCGGAAATCTCGTCTTTCTCAACCCCGCCGCGATTGCCGGCACCAACAGCAACAACTCCTTCACCCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCCCCGCTTCCCAGGACCTCAACCACCACTCCATGCACGCGCACCACGACGTCTCGGCACTGCATGGCTTCCTGCCGCGCATGCAGTACAACCACTGGAGCGCGCTTGACCCGGCATCGGCGGCGCGTGATACCCCACGCGCTCAGCAGGGTTTGTCTCTTGGGCTGGGGTCGTTCAGGGAGGGTCAAGGGCCGGGCATGTCCAGCGAAGACTTGCGCGTGTCCGGCGGTTCGCCGTCGTCGGCGTCTGGGGTTACCAATAATGGAGCTTCTGGCATTCAGAGCGTACTCTTGAGCTCAAAGTATTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAACGGGATTGGCACTGAGTTGGGTAAAAAGAGTGTGGGACAGACCAAGGTGATTGGAGAATCATCCGCAGCGGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAACGTAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTAATTGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTGTCGTCGTTTGAGCAAGCAGCGGGGATTGGGTCTGCGAGGACATACACTGCCCTTGCATTGCAAACAATCTCTAAGCAGTTTCGTTGTTTGAAAGATGCGATTGCAGGGCAGGTTCGATCTGCTAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTTAAATATGTGGACCATCATCTAAGGCAACAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCTTATCCCAAGGACTCGGACAAGCACATGTTGGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGACTTTGGAAACCAATGGTGGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCCACGAAAATGGCAGCCCCACCAGAGAAAGGACCTTCCAACGAAACCGAAGCTAAAAGTTTCAATTCCAAACAAGAGGTTTCAAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCATCAACGTCACCACTTGGTGGGAGTGTGAGAAACCAATCCGGATTCAGCTTCATGGGTTCATCAGAACTAGAAGGGATCACACAAGGAAGTCCGAAGAAAGCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATGGATGTGAAGCCCAATGAGGCAAACAGTGAGCAGCTCTCGATGAAATTTGGGAACGAAAGGCAAGGCAGAAACGAATCATCTTTCATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCGCCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCCGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCGAATGAGTTTGGTAGCATAAACACATCCTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2040 0.502 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNPAAIAGTNSNNSFTPHAPPSHTQQFVGIPLPASQDLNHHSMHAHHDVSALHGFLPRMQYNHWSALDPASAARDTPRAQQGLSLGLGSFREGQGPGMSSEDLRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKSVGQTKVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRSANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPEKGPSNETEAKSFNSKQEVSKSQNTAMVSVSRPSTSPLGGSVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNMDVKPNEANSEQLSMKFGNERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINTSSPHSSAAYESISMQNPKRFAAQLLPDFVT* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00704 679 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Lapu6g00704 679 Gene3D - 366 445 - -
Lapu6g00704 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 450 - -
Lapu6g00704 679 MobiDBLite consensus disorder prediction 219 246 - -
Lapu6g00704 679 Pfam Associated with HOX 178 314 IPR006563 -
Lapu6g00704 679 MobiDBLite consensus disorder prediction 434 504 - -
Lapu6g00704 679 CDD homeodomain 363 424 IPR001356 GO:0003677
Lapu6g00704 679 MobiDBLite consensus disorder prediction 642 660 - -
Lapu6g00704 679 SMART prehox3 173 315 IPR006563 -
Lapu6g00704 679 MobiDBLite consensus disorder prediction 467 504 - -
Lapu6g00704 679 Coils Coil 247 274 - -
Lapu6g00704 679 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Lapu6g00704 679 SMART HOX_1 363 427 IPR001356 GO:0003677
Lapu6g00704 679 MobiDBLite consensus disorder prediction 155 169 - -
Lapu6g00704 679 MobiDBLite consensus disorder prediction 434 450 - -
Lapu6g00704 679 MobiDBLite consensus disorder prediction 516 544 - -
Lapu6g00704 679 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Lapu6g00704 679 MobiDBLite consensus disorder prediction 137 169 - -
Lapu6g00704 679 FunFam BEL1-like homeodomain protein 9 366 428 - -
Lapu6g00704 679 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00704 Lapu-Chr6 7410926 7415946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00704 1 678 Homeobox Transcription Factor Family AT2G35940 51.216 4.81e-178 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu6g00704 POX 6.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00704 - - gmx:100810901 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00704 6 7410926 7415946 Lapu6g00704 6 7410926 7415946 ECH
Lapu6g00704 6 7410926 7415946 Lapu7g00122 7 1328957 1334523 PCT