Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00675 ATGTCGATGAACCACTACTCACCAGAAGCGAGACTATACTGGAGCGAGCAACAACAAGCCGCCACGTGGCTGGGAAACTCTCCCACTCCTCGTTTCAACCTGAACGACAACCAGGAGGAGTTGGAGGAGGAGGAAGAGGAGGTTGTGGCGACAGAGAACGGTGGTGGTGGAGGAGGTGGGGCGGCGGAAGAGGAGGAGAAGGAAGCGATGTTCGAGAAGCCGCTGACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATCCCGAAACAGCACGCCGAGAAGCACTTCCCGCTGGAGTGTTCGTCGTCGTCGTCGTCGTGCGGCGACAGCGCGAAGGGTGTGTTACTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTCAAGGACAAGCGCCTCCACGCTGGCGACGTCGTTTTTTTCCACAGACACCGCACCCATCCTCAACGCTTCTTCATCACCTCCACCCGCCGTCAAGCCAACCCCCCCGCTTACGTTGCCACCAGCGCCACACCGTCCTTCTATTCTACGCACCCTTATCCTGCGCATCAACTCATTTTCCCATACCAACCTCACTCTCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAGCCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATCATGATTCCCAAAACTCCACGCCACAATGCTCTTACACTCTGTCCTCGCCACTTTCCCACCACCACTTACACCGTCAACCCTCTTATTCTTCTTCTTCTTCAAACCCTCACCATCACATGCTACGTCAACAGCCATAA 900 0.56 MSMNHYSPEARLYWSEQQQAATWLGNSPTPRFNLNDNQEELEEEEEEVVATENGGGGGGGAAEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLECSSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFITSTRRQANPPAYVATSATPSFYSTHPYPAHQLIFPYQPHSLHAPPGGGSQGQSQTTPGGNSSGGRVLRLFGVNMECQPDHDSQNSTPQCSYTLSSPLSHHHLHRQPSYSSSSSNPHHHMLRQQP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00675 299 SMART B3_2 71 179 IPR003340 GO:0003677
Lapu6g00675 299 CDD B3_DNA 70 168 IPR003340 GO:0003677
Lapu6g00675 299 MobiDBLite consensus disorder prediction 252 299 - -
Lapu6g00675 299 MobiDBLite consensus disorder prediction 213 299 - -
Lapu6g00675 299 Gene3D - 59 188 IPR015300 -
Lapu6g00675 299 Pfam B3 DNA binding domain 71 175 IPR003340 GO:0003677
Lapu6g00675 299 ProSiteProfiles B3 DNA-binding domain profile. 71 181 IPR003340 GO:0003677
Lapu6g00675 299 MobiDBLite consensus disorder prediction 24 77 - -
Lapu6g00675 299 SUPERFAMILY DNA-binding pseudobarrel domain 68 177 IPR015300 -
Lapu6g00675 299 MobiDBLite consensus disorder prediction 221 237 - -
Lapu6g00675 299 Coils Coil 34 54 - -
Lapu6g00675 299 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 261 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00675 Lapu-Chr6 7030033 7033355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00675 64 271 RAV Transcription Factor Family AT5G06250 50.000 3.47e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu6g00675 B3 8.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00675 K09287 - gmx:100802734 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00675 6 7030033 7033355 Lapu6g00675 6 7030033 7033355 ECH