Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00672 ATGGCGGCTGTGAGAAAAATAATTCAGGCGAATAAAAATAAAACGTTGTCGCCATCTCTCTTTGCTTGTCGCCGAGGAATTGCTTACAAGCTTTTTGTTGGAGGCCTGTCCTTCTACACCACAGAGAAAGCATTGTCAGATGCATTTTCCAATTACGGGCAAGTTATTGAAGCTAAAATTGTAACAGATAGGGTATCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCACCAGACGAGGCTGAGAATGCCATAGCAGAGATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCTAATGTCAACACTGACGGTGGGATGCCAATTGCTAGAGGACCTCCTGAACCAACACCTGATCCTTGA 387 0.4264 MAAVRKIIQANKNKTLSPSLFACRRGIAYKLFVGGLSFYTTEKALSDAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASPDEAENAIAEMKGKTLNGRVIFVDYAKPNVNTDGGMPIARGPPEPTPDP* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00672 128 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 110 - -
Lapu6g00672 128 SMART rrm1_1 30 103 IPR000504 GO:0003723
Lapu6g00672 128 SUPERFAMILY RNA-binding domain, RBD 29 119 IPR035979 GO:0003676
Lapu6g00672 128 Gene3D - 9 112 IPR012677 -
Lapu6g00672 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Lapu6g00672 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00672 Lapu-Chr6 7006887 7008242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00672 31 106 Eukaryotic Initiation Factors Gene Family AT1G49760 35.526 9.07e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00672 - - pvu:PHAVU_001G192800g 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00672 6 7006887 7008242 Lapu6g00672 6 7006887 7008242 ECH