Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00666 ATGGAAGTTATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAGGAGCTGATTTCCTTCTATCTTCATAATAAACTCCAAGGAGAAAGAGAGGACATGAATCGTGTTATCCCAGTTGTTGATATATACGACTACAACCCCTCTCAACTCCCACAAATCTCAGGAGAGGCGAGTCTGAGAGACACAGAACAATGGTTCTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAACGTCTCACAACCACAGGGTACTGGAAAGCTACAGGGTCTCCAAATCATGTTTATTCTTCAGACAATCGCATCATAGGCATTAAAAGGACCATGGTTTTCTACAGTGGAAGAGCTCCAAACGGAGCCAAAACCGATTGGAAGATGAATGAGTATACGGCCATCAACGGTGAACCATCACAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCGAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCAAGGAGGGACACAGTGAGGAATTCCACTGCTCAAAATGGTGAAGAGCAACAAAAGGGTTCGACCTCAACGTCTTATGATTATCCTCATCATCAAATGTTGGAGAGAAGTTCAACATGCTCACCAGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCCCCGTGCACGGTGAGGAAGCAACCCAAATGGACGTCGACAACGACCCTTTTCTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCTGAACCATGA 762 0.4528 MEVMPPGYRFYPTEEELISFYLHNKLQGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAINGEPSQLRKEFSLCRVYKKSKCLRAFDRRPPPRRDTVRNSTAQNGEEQQKGSTSTSYDYPHHQMLERSSTCSPESSSSGDLDHDQPPVHGEEATQMDVDNDPFLDWEKVDLFLGSEP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00666 253 ProSiteProfiles NAC domain profile. 4 155 IPR003441 GO:0003677|GO:0006355
Lapu6g00666 253 MobiDBLite consensus disorder prediction 172 218 - -
Lapu6g00666 253 MobiDBLite consensus disorder prediction 161 238 - -
Lapu6g00666 253 Gene3D NAC domain 13 159 IPR036093 GO:0003677|GO:0006355
Lapu6g00666 253 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 207 - -
Lapu6g00666 253 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Lapu6g00666 253 MobiDBLite consensus disorder prediction 220 238 - -
Lapu6g00666 253 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00666 Lapu-Chr6 6947352 6949247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00666 2 246 NAC Transcription Factor Family AT3G44350 45.276 1.16e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu6g00666 NAM 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00666 - - pvu:PHAVU_001G192000g 446.047