Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00653 ATGCAAAAAATGTCTGGGACAGGGCAGAGAGATGTAATGATAAAAAATCCAGAGTCACCAGAGGGAAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGACCAAGCCTTCAGATGGTGAAGATGAGACAAGAGTGGCAGACACGAAGGTTGAAGATGAGAAAAGGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAAGGTATTTTGTCAATCTGTGGGAGAAGTTTCGGAGATTAGGATAATGAAGGGAAAAGAATCCTGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAAGCTATTGAGGAACTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAAGAAAGTTGTTGCAGAGATTGGACCAGGAGTCATTTCTGTGGAACTGTTGAAGGACCCACAGAATTCTGGCCGAAACCGTGGATTTGCTTTTATTGAGTATTACAATAATGCTTGTGCAGAATATTCAAAGCAGAAAATGTCAAACTCAAACTTTAAACTTGACAGTAATGCTCCAACAGTGAGTTGGGCTGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCCGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCCGGCCACGAAAAGAGCAGATATGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCTGATCAGAAGTCATCTGGCGCAGCAAATCAACAGAACTCAGCCTTACTCCCCACTTATCCACCTCATGTAGGTTATGGTATGGTTGGTGGTGCTTATGGTGCTATAGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCATTGATGTATGGTCCTGGACCAACCTCTCCTGGCATGGCAATGATGCCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCCTGCTCCAGTGCCAGAATCTCGACATGGGAGGAGTGGCGGCGGTAGTTCAAGTGGTGGAAAACGCAGTAACGATAATAATCGCAATCGTGGGCATGGCCGATATCATCCCTATTAA 1482 0.4359 MQKMSGTGQRDVMIKNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEEEEETKPSDGEDETRVADTKVEDEKRKHAELLALPPHGSEVYIGGIPQKVSEEDLKVFCQSVGEVSEIRIMKGKESCEAKGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQAKHRLFIGNVPRNWTEENMKKVVAEIGPGVISVELLKDPQNSGRNRGFAFIEYYNNACAEYSKQKMSNSNFKLDSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGHEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQNSALLPTYPPHVGYGMVGGAYGAIGAGYGAAGFAQPLMYGPGPTSPGMAMMPMLLPDGRIGYVLQQPGFQQPAPVPESRHGRSGGGSSSGGKRSNDNNRNRGHGRYHPY* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00653 493 SUPERFAMILY RNA-binding domain, RBD 116 373 IPR035979 GO:0003676
Lapu6g00653 493 MobiDBLite consensus disorder prediction 21 35 - -
Lapu6g00653 493 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 282 391 - -
Lapu6g00653 493 Coils Coil 41 86 - -
Lapu6g00653 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Lapu6g00653 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Lapu6g00653 493 Gene3D - 16 199 IPR012677 -
Lapu6g00653 493 MobiDBLite consensus disorder prediction 36 88 - -
Lapu6g00653 493 CDD RRM_SF 121 193 - -
Lapu6g00653 493 SUPERFAMILY RNA-binding domain, RBD 200 284 IPR035979 GO:0003676
Lapu6g00653 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Lapu6g00653 493 SMART rrm1_1 200 277 IPR000504 GO:0003723
Lapu6g00653 493 SMART rrm1_1 294 367 IPR000504 GO:0003723
Lapu6g00653 493 SMART rrm1_1 120 193 IPR000504 GO:0003723
Lapu6g00653 493 MobiDBLite consensus disorder prediction 89 104 - -
Lapu6g00653 493 MobiDBLite consensus disorder prediction 451 493 - -
Lapu6g00653 493 FunFam RNA recognition motif-containing protein 30 199 - -
Lapu6g00653 493 Gene3D - 282 406 IPR012677 -
Lapu6g00653 493 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 485 - -
Lapu6g00653 493 Gene3D - 200 280 IPR012677 -
Lapu6g00653 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 268 IPR000504 GO:0003723
Lapu6g00653 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Lapu6g00653 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Lapu6g00653 493 SMART rrm2_1 294 367 IPR003954 GO:0003676
Lapu6g00653 493 SMART rrm2_1 120 193 IPR003954 GO:0003676
Lapu6g00653 493 MobiDBLite consensus disorder prediction 1 104 - -
Lapu6g00653 493 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00653 Lapu-Chr6 6836305 6842185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00653 158 493 Eukaryotic Initiation Factors Gene Family AT2G23350 27.027 1.68e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00653 K13161 - gmx:100798476 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00653 6 6836305 6842185 Lapu6g00653 6 6836305 6842185 ECH