Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00634 ATGGCGGAAGAACACCGATGCCAAGCTCCCGAAGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACCATGAATCTCTGTTCCAAATGCTACAGAGACATCCGATTGAAGGAGGAAGAGCAAGCCAAAACCAAATCCACCATCGAAACCGCTCTGTCTTCATCCTCCACCGCCGCAGCAACCGTCGCCTCCGCCACCGCTGTGGTTTCCTCGCCTGTGCCGGTTGAATCCCTCCCTCAACCGGCGGCGGTGACCGCGCCGGACGCGTGCGCACCGCTTCAGACGAACCGGTGCGGCGCGTGCCGGAAGCGCGTGGGGTTGACCGGGTTCAAGTGTAGGTGTGGAACCACGTTCTGTGGGGCCCACAGGTACCCCGAGAAACACGCGTGTGGCTTCGATTTCAAGGCGGTCCACCCACGTTCCCAATTTGAGGGGTCCCTTTTGAAATTGAAATGTAAAAAACTATTAGCAGCTAGTTTAATATTTCCTGTGCCAAATTATCCTCTGCATTGTATTTCATTTTCTGCTGTTGCACTCTGGACTTTTGTGTAG 567 0.5556 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSSSSTAAATVASATAVVSSPVPVESLPQPAAVTAPDACAPLQTNRCGACRKRVGLTGFKCRCGTTFCGAHRYPEKHACGFDFKAVHPRSQFEGSLLKLKCKKLLAASLIFPVPNYPLHCISFSAVALWTFV* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00634 188 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Lapu6g00634 188 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Lapu6g00634 188 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 142 - -
Lapu6g00634 188 Gene3D - 84 146 IPR035896 -
Lapu6g00634 188 ProSiteProfiles Zinc finger AN1-type profile. 97 143 IPR000058 GO:0008270
Lapu6g00634 188 Gene3D - 1 64 - -
Lapu6g00634 188 SMART AN1_Zf_4 103 140 IPR000058 GO:0008270
Lapu6g00634 188 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Lapu6g00634 188 SUPERFAMILY AN1-like Zinc finger 96 143 IPR035896 -
Lapu6g00634 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Lapu6g00634 188 Pfam AN1-like Zinc finger 103 139 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00634 Lapu-Chr6 6660174 6661967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00634 1 141 C2H2 Transcription Factor Family AT3G52800 51.007 1.77e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00634 - - gmx:100527251 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00634 6 6660174 6661967 Lapu6g00634 6 6660174 6661967 ECH
Lapu6g00634 6 6660174 6661967 Lapu7g01178 7 24463635 24465326 PCT