Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00620 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTATCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCCTTGATATTCAGGTACATGTTAGCTGGCGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTGCATCACCCTCTTCAGCATTACCAACCTACTTTGCTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCAGAGCCAGGGCGGTGCCGGAGAACTGATGGCAAAAAGTGGCGGTGTTCGAGGGACGTGGTAGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGGTAATTGTGGTGGTAGTGGTGGTGGTGGTGGATCTCTAGGACTAGGAGCTTCATCTTCCATATCTTCACCGCCGCTAGCCACTGCTTCTCTGAAATCCCCTTTTGATCTTCGTCATCTTAGTGAACGCTCATCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAACGAAGATCATGTGGGTGGGGATGGCAGAACAGGTGGGCATATGCTGAGACATTTTTTCGATGATTGGCCACGATCACTGGAAGACTCTGACAACGTTGAAAACAATGCTGCTGGGAGGAAGAACTCGGCCACATGCCTCTCTATTTCTATGCCCGGAAATGCTTCCTCGGATGTCTCATTGAAATTGTCTACGGGCTACGGAGAGGACCTGGGCCCAACAAATGAGAATGTGAATCTCGAGGCAGACCACCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGGGTAGTCAAGTGGCTTCCATGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCATTTGCCTCCTGGTTCTGGATCTGAGACCAGCTTCATTAGCACCTGA 1158 0.4957 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLSATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPTLLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSGNCGGSGGGGGSLGLGASSSISSPPLATASLKSPFDLRHLSERSSGTKNEDKSLFENEDHVGGDGRTGGHMLRHFFDDWPRSLEDSDNVENNAAGRKNSATCLSISMPGNASSDVSLKLSTGYGEDLGPTNENVNLEADHLQLNWAGGWASGSQVASMGGPLAEALRSSTSTSSPTSVLHHLPPGSGSETSFIST* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00620 385 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu6g00620 385 MobiDBLite consensus disorder prediction 356 385 - -
Lapu6g00620 385 MobiDBLite consensus disorder prediction 1 38 - -
Lapu6g00620 385 PANTHER GROWTH-REGULATING FACTOR 5 35 304 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lapu6g00620 385 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu6g00620 385 Pfam WRC 142 184 IPR014977 -
Lapu6g00620 385 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Lapu6g00620 385 MobiDBLite consensus disorder prediction 1 23 - -
Lapu6g00620 385 MobiDBLite consensus disorder prediction 170 210 - -
Lapu6g00620 385 MobiDBLite consensus disorder prediction 24 38 - -
Lapu6g00620 385 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu6g00620 385 MobiDBLite consensus disorder prediction 228 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00620 Lapu-Chr6 6482883 6486246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00620 1 372 GRF Transcription Factor Family AT3G52910 51.804 4.08e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lapu6g00620 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00620 - - gmx:100814842 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00620 6 6482883 6486246 Lapu6g00620 6 6482883 6486246 ECH