Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00615 ATGCGGTCCACCAACGGTACCACTTGTGCAGCATCAAGCAGCGGAGCCTCTAACGGTAACACAGGGCGCCACCCTGTGTACCGTGGAGTGAGGCGCAGGAGTAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCTAGAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCTGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGGAAGGATGCTGAACTCAACTTCCCTAACTCCGCCTCTTCTCTTCCCGTTCCTGCTTCATCCGCTGCTCGTGACATTCAGATTGCTGCCGCCAGTGCAGCAGCCGCTGTCGGAGCAGCTAATGATGCACTAAGTGAAGGAAGCCGCGGAGGGAATGTTTCGGTTTCATTGGCACAAGAGTTTTCAGGGGAAAACTTAAACCACTTTGTGGACGAGGACTTGATCTTTGATATGCCGAATATTCTGGTCAATATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTGCTGCTACAGACTATGACTACATGGATGAAAATCCTAACCTCTGGGGGTTCCCTTACTAG 579 0.5078 MRSTNGTTCAASSSGASNGNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQIAAASAAAAVGAANDALSEGSRGGNVSVSLAQEFSGENLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFAATDYDYMDENPNLWGFPY* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00615 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 20 188 IPR045277 GO:0003700
Lapu6g00615 192 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Lapu6g00615 192 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g00615 192 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Lapu6g00615 192 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Lapu6g00615 192 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Lapu6g00615 192 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Lapu6g00615 192 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Lapu6g00615 192 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Lapu6g00615 192 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Lapu6g00615 192 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Lapu6g00615 192 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00615 Lapu-Chr6 6406125 6406771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00615 14 191 AP2-EREBP Transcription Factor Family AT2G36450 63.934 7.11e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00615 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00615 - - gmx:100813781 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00615 6 6406125 6406771 Lapu6g00615 6 6406125 6406771 ECH
Lapu6g00615 6 6406125 6406771 Lapu7g01133 7 23082914 23083497 PCT