Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00610 ATGGAGAGCACGCGCAGATCGTTGGATAGATCGAGAGAGCCAGGTCCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCCCGACAGTTACCTCAACGACAGCAAGGGTCCGGGGCAGTTCCTACCTTGGTGTCTACGAGGGTTCGAGTAAATGACAGGGACTCCGAAAGCAGCGATTCGGGTCGCGGCGGCGGCGGTTACCAGCCGCAACCTCCGCTGTACCATGAGCTTGTGGCTCAGTATAAGACCGCGCTTGCTGAACTCACTTTCAATTCCAAGCCGATAATTACGAACTTGACTATTATTGCTGGGGAGAACCAGTCTGCTGCCAAGGCAATTGCCGCCACAGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCAGTCAGACTACCTGAGGTATTCTGCAAAGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAGCATCTTTTTGGAACTTGGAAAGGAGTCTTTTCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAACGGTTCAGCTTCAGTATCTGCTAAGAGTGATTTGCAGTCACAACGCCCGCCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAAACTCAAATGAGGATTCAGAGAGGCCAGATAGAGGTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTTGGTGTGTATTGCAGAATAATCAGCACGCACACAGAGATGTGTTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAAATAAGCTCATTGATTTAGGGCATGAAAAAACATGGTTCAAAACAGATGGTGGTGACGCAGAGACCATATCTGTGCCAAAAAATGGTTTCAGTCTCAAGCGTAGTTTTGCAAATCGTGAAGCGCCAAAGTCTATGAATGTGGAAGCACATCGTCAGCCAAGACAAAGTATAACTAACATACGCAACAACCTGATGTCAGGTAACTGGAAAAATTCTGAGGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGATTGATCATGGACCCAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGAAGATGAAAATTTGGACGGTGAAGATCACATGCATATCCTACGCCCTTATGGGGCAAAGTTTGATAGGGAAATACCCACTGTTAAGAAACAACTTCTTGGTTTTGGCGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCACTCTATTGATAAGTTGAATCTGAAGCCAGTTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACACAGTTTCTTTACCTGGCAAGAAGGGGAACCAATCTTTTACATCAAAGGCAGTAGTAGGAATGGCCAAAACTGTAGAGCAACCACTTGATTCTGGGGAAACAGAATCCCCTTCTAGGCAGTCACCTATGCAACGACAGTCTCCATCACTGCCAGGAACAGTATACCATCCTCATTCAGTACAAAATTTGGCCGAGCAAGAAATGCCGCAGATTCTCAAAGCATCTCAACTTTTGGGAGGTCCAACAAGTCAGCACAATCGAGATCGCTCATCTACCCTTCATCCCATTGTTCAGGTTGGTAACATGCGAAGATCACAGGAAAAGGACATGCAGGGTCCGTTATCTTCAGCAACTAATTTTCAACCAAAGCTTATGCAACAGCAGCTGGACTCTTCTCAGACTGAAGTTTCTGCTAAAATTAAGCTGCCCCAGTCTAAAATTTCTTTAAGCAAAGAAGTTTCAGAACAATCAACCAAAAATAATTTGTCAGCTGCAGCTGTCAAGAGTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTGTCTAAGTCCGGGGTTCAGGTTACTCAATCTGGCAGGTCTTCTCCTACCACATTAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTTATTAGATCCTCTGCATAAAGATTCTTCTACACTGCCTAAAAAACCTCAAGGAAAGGGTGGACAACCATCACAAAGGCTTTCTACTCAACCACCTTCCTCTAATGTGAATGCTGCCAAAAATAATAATGCAAATCCTATCGCAAACCTTTTAAGTTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAACCACCGACTGTGGTACCAAGCGAGGCGCTGAGAGGATCCAAAGATAAAACTGTAATCATTAGCACCAGTAGCGCTTTACCAGCTACATCAGTTTCTGATTCTGTAGCTGTCCCAGTATCATCTTCCAGAGATGAGGTAGACGCTGCTACAAAATCCTCTCTCGCCCCACCTCAATCATCTAGTGCGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAGTTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCCCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAAGAACAGTATAACAGACACTTGGAGTGGCATGCCTCAAGAGAAAATGGTCCAATTAAAATATCCAGAAGTTGGTATGCTAAGTCAGGTGATTGGATTGCCGGCAAGGTAGAATATTCATCTGAGTCTGAGTTTACTGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCTAGCAGATGAAAATCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTCGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGTGCCATTTACATGAATTACTCAGATATCAATAGTGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCGGAGAACTCAATTGTCACCAATTTGGATAATGATTAA 3090 0.4379 MESTRRSLDRSREPGPKKPRLIDELSARQLPQRQQGSGAVPTLVSTRVRVNDRDSESSDSGRGGGGYQPQPPLYHELVAQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFSPQCLQMIEKELGFAPAVNGSASVSAKSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLNSNEDSERPDRGLGASRPWLDPRINMLWCVLQNNQHAHRDVFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGNKLIDLGHEKTWFKTDGGDAETISVPKNGFSLKRSFANREAPKSMNVEAHRQPRQSITNIRNNLMSGNWKNSEEEEFTWDEMNSGLIDHGPNVSSNLSTDSWMTEDENLDGEDHMHILRPYGAKFDREIPTVKKQLLGFGGHPPSSWQLQKHHSIDKLNLKPVYSEGFVSTISGLPANTVSLPGKKGNQSFTSKAVVGMAKTVEQPLDSGETESPSRQSPMQRQSPSLPGTVYHPHSVQNLAEQEMPQILKASQLLGGPTSQHNRDRSSTLHPIVQVGNMRRSQEKDMQGPLSSATNFQPKLMQQQLDSSQTEVSAKIKLPQSKISLSKEVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQVTQSGRSSPTTLISSGSAVASPSLLDPLHKDSSTLPKKPQGKGGQPSQRLSTQPPSSNVNAAKNNNANPIANLLSSLVAKGLISAETEPPTVVPSEALRGSKDKTVIISTSSALPATSVSDSVAVPVSSSRDEVDAATKSSLAPPQSSSAKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKICGIRFKQEEQYNRHLEWHASRENGPIKISRSWYAKSGDWIAGKVEYSSESEFTDSVVVHDKETDSSQLDTMILADENQCLCVLCGELFEDVYCHERNEWMFKGAIYMNYSDINSEMESRNVGPIIHAKCLSENSIVTNLDND* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 1 69 - -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 537 564 - -
Lapu6g00610 1029 Gene3D - 73 198 IPR008942 -
Lapu6g00610 1029 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Lapu6g00610 1029 CDD CID_Pcf11 78 188 IPR047415 -
Lapu6g00610 1029 Pfam CID domain 82 191 IPR006569 -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 1 24 - -
Lapu6g00610 1029 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 684 765 - -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 691 722 - -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 739 765 - -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 536 564 - -
Lapu6g00610 1029 SUPERFAMILY ENTH/VHS domain 76 203 IPR008942 -
Lapu6g00610 1029 MobiDBLite consensus disorder prediction 28 44 - -
Lapu6g00610 1029 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 41 1020 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lapu6g00610 1029 SMART 558neu5 76 198 IPR006569 -
Lapu6g00610 1029 ProSitePatterns Zinc finger C2H2 type domain signature. 885 905 IPR013087 -
Lapu6g00610 1029 ProSiteProfiles Zinc finger C2H2 type domain profile. 883 910 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00610 Lapu-Chr6 6344449 6350780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00610 29 233 C2H2 Transcription Factor Family AT4G04885 51.707 5.57e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00610 CID 9e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00610 K14400 - gmx:100788958 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00610 6 6344449 6350780 Lapu6g00610 6 6344449 6350780 ECH
Lapu6g00610 6 6344449 6350780 Lapu7g01126 7 22820236 22827959 PCT