Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00609 TCTCCTCCTTCCAAGTCGCCTTCATCAACCGCTGAGTTTGAGAAGCTTAGTGCTTTGCCGCACCCACTTCAATGCTTGCAGGGGAACCCGGTTCCAGCATTCCTATCCAAGACTTTCGACCTCGTTGATGATCCATCGTTGGATCCGGTCATATCCTGGGCCTCCACCGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCCATACACGTCTTGCCCCGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGTGGGTACTCTTGTATTTTAT 297 0.4882 SPPSKSPSSTAEFEKLSALPHPLQCLQGNPVPAFLSKTFDLVDDPSLDPVISWASTGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYVGTLVFY 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00609 99 Gene3D - 26 97 IPR036388 -
Lapu6g00609 99 SMART hsfneu3 30 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00609 99 FunFam Heat stress transcription factor B-4 26 97 - -
Lapu6g00609 99 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 92 IPR027725 -
Lapu6g00609 99 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00609 99 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00609 99 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00609 99 SUPERFAMILY "Winged helix" DNA-binding domain 32 92 IPR036390 -
Lapu6g00609 99 Pfam HSF-type DNA-binding 34 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00609 Lapu-Chr6 6338729 6339026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00609 17 92 HSF AT5G03720 80.263 7.12e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu6g00609 HSF_DNA-bind 9.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00609 K09419 - gmx:100788429 160.614