Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00602 ATGGAGTTTTGGGGTGTTGAAGTGAAAGTTGGAGAATCTCTCGAGGTTGATCCAGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTGACTAAGGCTAAAGGAGGTGAACCGGTAGCCTTGTATGTGAAGTTTGGTAACCAGAAGCTTGTGCTTGGAACGCTTTCTTCTGATAAATTTCCTCAAATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCATAGCTGGAAAAATGGGAGTGTCTTCTTTACCGGATTTAAAGCTCAATCTCAGTCGGAGTCATATCCTTTTAACACTATTCTGCTTTGA 330 0.4091 MEFWGVEVKVGESLEVDPGDDKIIHLSNACLGDVTKAKGGEPVALYVKFGNQKLVLGTLSSDKFPQISYDLIFEKEFELSHSWKNGSVFFTGFKAQSQSESYPFNTILL* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00602 109 Gene3D Nucleoplasmin core domain 1 100 - -
Lapu6g00602 109 FunFam Histone deacetylase HDT1 1 99 - -
Lapu6g00602 109 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00602 Lapu-Chr6 6241011 6249382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00602 1 94 C2H2 Transcription Factor Family AT5G03740 55.319 1.89e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00602 - - pvu:PHAVU_001G186300g 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00602 6 6241011 6249382 Lapu6g00602 6 6241011 6249382 ECH