Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00601 ATGCCCACAGCAAATGGTGAGATAGAAAGTAGTGAAGGTGATGAGGATAGCGATGAGGTAGATGACGATGATGAATCTGATGAGGAGACACCCAAGAAGATTGAAGCAGGCAATAAGCGGAATATTGACTCTTCTAAGAAAACACCTGTCCCTGTGAAGAAGGCAAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGAAACTGCGAATAACAAGCGGCAGACTCCAAAATCAGGGGGAGATTACAGCTGCAAGCCTTGCGGCAGGTCATTTAAGACAGACGATGCCTTAAACTCTCATAACAGGGCCAAGCACAGTGCTAAGTAA 375 0.4507 MPTANGEIESSEGDEDSDEVDDDDESDEETPKKIEAGNKRNIDSSKKTPVPVKKAKFVTPQKTDSKNVVHVATPHPSKQAGKETANNKRQTPKSGGDYSCKPCGRSFKTDDALNSHNRAKHSAK* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00601 124 Gene3D Classic Zinc Finger 70 124 - -
Lapu6g00601 124 MobiDBLite consensus disorder prediction 9 29 - -
Lapu6g00601 124 MobiDBLite consensus disorder prediction 79 94 - -
Lapu6g00601 124 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 124 IPR013087 -
Lapu6g00601 124 MobiDBLite consensus disorder prediction 1 124 - -
Lapu6g00601 124 ProSitePatterns Zinc finger C2H2 type domain signature. 100 121 IPR013087 -
Lapu6g00601 124 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00601 Lapu-Chr6 6241011 6249382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00601 45 123 C2H2 Transcription Factor Family AT5G03740 57.471 3.50e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00601 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00601 - - gmx:100812152 193.741