Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00588 ATGGATTGGCATCACACTGCAAAACCGTTTGTTCCTCAGCCAGAGACCCTAAGCTTCTTCTACAACTATAACAACAACCCATATCCAGGAGTGGAAGTGAAACAAGCGACATTGTTGGAGACAGGAGAAAGGTCGATTCCCGCAATGGACAACGGAAGCAAAGAGAAGAAGAAGCGTTTAGCAAGCAACCAGATAGAGTTGTTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTCTCCAGGGAGCTAGGCCTCCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAAACCAAGCAGCTTGAGCACATGTACGATGTTCTCAAACACCAAAATGATGTTATCTCCTACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTAAAGGCAATGCTAAGTAAAGAACAAGGTTTTGGGACGCAAACATTCAGCGGTTATCCAGATATATCTGGAGAAGAAACAGTAGAAAGCACATCAGAAGGTCTAAGGGGTTCCAACAAGGCACTGGGAAAAAGTAACATAGAGCAGGTTGCAGATCAGGGCTTTAGTTCTTTCACTGTGGAGGATTATAACACTGTTTCACTGCCTCTCTGTCACTGGCCTGTTGTGCCTTATTAG 657 0.446 MDWHHTAKPFVPQPETLSFFYNYNNNPYPGVEVKQATLLETGERSIPAMDNGSKEKKKRLASNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHMYDVLKHQNDVISYEKQKLQEEVMKLKAMLSKEQGFGTQTFSGYPDISGEETVESTSEGLRGSNKALGKSNIEQVADQGFSSFTVEDYNTVSLPLCHWPVVPY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00588 218 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Lapu6g00588 218 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Lapu6g00588 218 FunFam Putative homeobox-leucine zipper protein ATHB-51 53 116 - -
Lapu6g00588 218 SUPERFAMILY Homeodomain-like 53 121 IPR009057 -
Lapu6g00588 218 CDD homeodomain 54 112 IPR001356 GO:0003677
Lapu6g00588 218 Gene3D - 48 119 - -
Lapu6g00588 218 SMART HOX_1 53 115 IPR001356 GO:0003677
Lapu6g00588 218 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Lapu6g00588 218 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Lapu6g00588 218 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Lapu6g00588 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 165 IPR045224 GO:0003700
Lapu6g00588 218 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00588 Lapu-Chr6 6113536 6115239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00588 12 141 Homeobox Transcription Factor Family AT5G03790 51.748 7.91e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu6g00588 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00588 - - vra:106757543 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00588 6 6113536 6115239 Lapu6g00588 6 6113536 6115239 ECH
Lapu7g01110 7 22290248 22291996 Lapu6g00588 6 6113536 6115239 PCT