Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00580 ATGCAAATGATTGCTGAATCAATCATGAGACCGTGCTTCCATTTTTGCTATTCCTATACCTTTCTTCTTCTTTTCCTTCTCCTTGCCCATCACACTATTTCACAGAAAACTTGTCCAAATTGTGGCTCTGTGCAAGTTCCATACCCTTTGAGCACACATCCAAGTTGTGGTGATCCATACTACAAGCTTCGTTGTGATTCCCACTCTCAAAGGCTTTACTTCGATACCCTCAATGGAAGTTCCTATCTCCTTCTCCGAATCATGCCTTCAATCCAGCGCATGGTGGTAGAACCATCACCTTGGTTACCAGATTCGTGTGTTACACAAGACATGCCAAGAAGCAATGGTATATGGTTGAACCAGTCACTCCCTTTCAATATAACTTCATCTAATACAGTGTTCCTCCTTAATTGCTCCCCACGCCTCTTGGTTTCTCCTCTCAACTGCACTTCTTCAAGTGTTTGCCATCGTTACTTGGGGAGTTCAGGTCATGTTGACACAAAACGAGCACTTGAGTGTGCAAGTGGTCTTCACCCCTGTTGCACTTTTCTAGCTGGTGGGATACCTTCAGCTTATAGGATCAGGCTTCATGACTCTGGCTGCAAAGCATTCAGAAGCATCCTTCATTTGAACCAAGACAAGCCTCCTAATCAGTGGGAGGAAGGGCTTGAAATTCAATGGGCTCCTCCACCCGAACCAGTGTGCAAGACACAAAGGGATTGCTCTGGAGACTCTACGTGTTCCCCTTCTGGTAGAGATGGCTTATTTCGCTGTCTTTGTAATGGGGGACACCGTTGGAACCCTTTTGTCACAACGTGTGTGAGGTATGAGAGAAAACTCAAATGGAAAACCAGCTTGGTGGTCTCAATAGGTGTTGTTGTTACTTTTTTCTCTCTTGTTGTGGTTCTGACCATCATCTCAAAGTCCCGCAAAATCTCCACCTATAGAGAGAATAAGGCCAAGGAAAGAGAAGACAAACTGAAATCAAGTGCTGGGGAGAAGCCTTGTAGGATGTTTCAACTGAAAGAGGTGAAGAAAGCAACAAATGGTTTTTCCCAACAGAGGTTCTTGGGGAGTGGTGGCTTTGGTGAAGTTTACAAAGGTGAGCTACAAGATGGAACATTAGTGGCAGTGAAGAAAGCTCGGGTGGGAAACCTTAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTCTCTCAAGTCAATCACAAGAACTTGGTCAGACTCTTGGGGTGCTGTGTGGAATCTGAGCTACCATTTATGATCTACGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTGTTCCAACTTTCTAGACTGGAAAACAAGGCTCAAGGTCGCTTTTCAAACTGCAGAAGCATTGGCCTACTTGCATTCTGCTGCACACACTCCCATATACCATAGAGATGTTAAGTCAACAAACATACTATTGGATGATGATTTCAATGCCAAGGTCTCAGATTTTGGACTCTCCAGATTGGCTAGTCCGGGACTCAGTCACGTGTCAACATGTGCTCAAGGAACGTTAGGGTACTTGGATCCTGAATACTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCACAGAAAGCGATTGACTTCAATCGTGATGAAGATGACGTCAACCTAGCAATTCATGTGAATCAACGTGCGAGCAATGGTACAATCATGGAATTGGTGGATCAAAGGCTTCTTTCCGTGGGGGATAAAATGTTCACGAGCATAAAACTCTTCTTGGAGCTTGCACTTGAATGTCTGAGAGAGAAGAAAGGTGAAAGGCCTAATATGAGGGATATTGTTCAACGCCTACTATGCATAATTAGGATTGTAGAACAAGAGTGA 1902 0.439 MQMIAESIMRPCFHFCYSYTFLLLFLLLAHHTISQKTCPNCGSVQVPYPLSTHPSCGDPYYKLRCDSHSQRLYFDTLNGSSYLLLRIMPSIQRMVVEPSPWLPDSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLLNCSPRLLVSPLNCTSSSVCHRYLGSSGHVDTKRALECASGLHPCCTFLAGGIPSAYRIRLHDSGCKAFRSILHLNQDKPPNQWEEGLEIQWAPPPEPVCKTQRDCSGDSTCSPSGRDGLFRCLCNGGHRWNPFVTTCVRYERKLKWKTSLVVSIGVVVTFFSLVVVLTIISKSRKISTYRENKAKEREDKLKSSAGEKPCRMFQLKEVKKATNGFSQQRFLGSGGFGEVYKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPFMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDDFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFNRDEDDVNLAIHVNQRASNGTIMELVDQRLLSVGDKMFTSIKLFLELALECLREKKGERPNMRDIVQRLLCIIRIVEQE* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00580 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Lapu6g00580 633 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 324 426 - -
Lapu6g00580 633 CDD STKc_IRAK 357 623 - -
Lapu6g00580 633 Gene3D Transferase(Phosphotransferase) domain 1 427 632 - -
Lapu6g00580 633 SUPERFAMILY Protein kinase-like (PK-like) 329 623 IPR011009 -
Lapu6g00580 633 Pfam Protein tyrosine and serine/threonine kinase 353 623 IPR001245 GO:0004672|GO:0006468
Lapu6g00580 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 626 IPR044652 GO:0004672
Lapu6g00580 633 Gene3D Phosphorylase Kinase; domain 1 310 426 - -
Lapu6g00580 633 FunFam Wall-associated receptor kinase-like 20 427 633 - -
Lapu6g00580 633 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Lapu6g00580 633 ProSiteProfiles Protein kinase domain profile. 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00580 633 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00580 Lapu-Chr6 6048041 6049942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00580 20 633 Receptor kinase-like Gene Family AT5G02070 45.706 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu6g00580 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00580 - - gmx:100804678 1166.76