Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00571 ACTCAGAGAACACAGCAAAGGGACAACACAACAAACACAAGTAGTGTAAAGATTGAAGGGGTCCAAGAAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACCCAAACAAATGCCATTCATTTGGACCAAAATACTGAATGCTCTATTTGCCTCGGACAATGGGAAGATGAGGATGTGGTGAGGTTGTTGCCTTCTTGTAATCATCTTTTCCATAAATCCTGCATTGATGCATGGTTCATGGACCATGCCAGTTGCCCTGTCTGTCGATCACCAATCACTTCTGATTGTGAGTTAGCCTTGCCAATGCCTTCACAAAATGATGCTGATGCCTAA 339 0.4218 TQRTQQRDNTTNTSSVKIEGVQEEILNKIPVFSISTQTNAIHLDQNTECSICLGQWEDEDVVRLLPSCNHLFHKSCIDAWFMDHASCPVCRSPITSDCELALPMPSQNDADA* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00571 112 Pfam Ring finger domain 48 91 IPR001841 -
Lapu6g00571 112 ProSiteProfiles Zinc finger RING-type profile. 49 91 IPR001841 -
Lapu6g00571 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 5 103 - -
Lapu6g00571 112 SUPERFAMILY RING/U-box 39 97 - -
Lapu6g00571 112 SMART ring_2 49 90 IPR001841 -
Lapu6g00571 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 97 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00571 Lapu-Chr6 5983602 5983941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00571 15 102 C3H Transcription Factor Family AT2G20030 37.500 8.98e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00571 - K10664 vra:106756930 178.333