Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00568 ATGATAGGATTCAACAGAAACCTCTTCTGGCTTTCTGGCTCTGTCATTTTTCTCTTTTCTGTCTCATTTGTTCTTTATTCCACGCCACCTTCTCCCAGCGATAACACGGCCATTAGTCCTGAAGATAGTTTCAGTTTCCAGCTTGGTATGTTTAGCAAGATTATAAAGCTTAGTGGCGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACATCATCATCATCGTCATCATCATGAGAGACATAAGGAAAAATGTGACGGGGCCAAGTGGGATTCCAGGCTTATTCAAGACTATAATGTGAGTCTTGTTTTCACGGTTGACTTAAAGGGCTGTGCTAACTTCAGTAGCGTGCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTCATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGCAGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGTTATCTGAATACAATCATAGAATGGAACGACACCGCCAATTCCACCGGTGGTACTTCCTACAGCTACTCCTTTGCCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGTGGTTGGGGCACAAGCAGTGGCACTGAGAGTCACCGGTGATCAAGCAGCTTTCTATGGATGTGGATTTTATGGTGGGCAGGATACACTCAATGATGATGGTGGAAGACATTATTTTAAAGAATGCTTAATCCAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGAAGAGAAGGATGAGATTAGTGGGTCTATCACTGCTCAAGGGAGGCAATCGATGGAGGAAGAAAGTGGGTTTTCCTTTGTGAATTGTAAAATTGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCGTGGGGAGCCTATGCCACTGTGATCTTCTCAAAAACATTCATGTCTGATGTCATAGCCTCTGAAGGATGGAATGATTGGAGAGATCCCTCAAGAGACCAGAGCGTGTTCTTTGGGGAGTACCGTTGCCATGGACCAGGAGCAAATTATACAGCCAGAGTCTCTTATGCTAAGCAACTCAGGGATGACCAAGCAAACTCCTACATGGATATTTCCTACATTGATGGAAATGATTGGCTTCTTAATTATCCTCAAACCTATCTTAACCCTTCATATATCTAA 1248 0.4279 MIGFNRNLFWLSGSVIFLFSVSFVLYSTPPSPSDNTAISPEDSFSFQLGMFSKIIKLSGAQDLVSLITSIARRRHHHHRHHHERHKEKCDGAKWDSRLIQDYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSHTTLIIIDSGTYREKVAVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGVVGAQAVALRVTGDQAAFYGCGFYGGQDTLNDDGGRHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKEEKDEISGSITAQGRQSMEEESGFSFVNCKIVGSGRVWLGRAWGAYATVIFSKTFMSDVIASEGWNDWRDPSRDQSVFFGEYRCHGPGANYTARVSYAKQLRDDQANSYMDISYIDGNDWLLNYPQTYLNPSYI* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00568 415 FunFam Pectinesterase 102 407 - -
Lapu6g00568 415 Gene3D - 102 409 IPR012334 -
Lapu6g00568 415 SUPERFAMILY Pectin lyase-like 105 403 IPR011050 -
Lapu6g00568 415 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 98 402 - -
Lapu6g00568 415 Pfam Pectinesterase 110 399 IPR000070 GO:0030599|GO:0042545
Lapu6g00568 415 ProSitePatterns Pectinesterase signature 2. 256 265 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00568 Lapu-Chr6 5939545 5942798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00568 101 402 Carbohydrate Esterase AT1G05310 53.770 8.12e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00568 - - vun:114181275 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00568 6 5939545 5942798 Lapu7g00537 7 6032860 6038438 PCT