Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00549 ATGCAAATGCAAGAGGAACACATACAAATCATCAAGGGCAAGCGCACAAAGCGTCAAAGGCTTCCATCTCCACTTAGGTTAACCAAGTCGACATGTTCCACCGCAGGAAGAAGCGGCACAGACAATTCCGCAGGTTTTGATCCCCCAACAACCTCAAATGATTTAAGGAACGAAGAGGACGAAGACTTGGCCAATTGTTTGATTCTCCTGGCTCAAGGCCATAACACTCCAAAACCCTCGCACAACAAGGAATCAGAGCTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAGATTTTCAAAGGCAAGTGCAGAAGAAAAGCAAGGACTAGTTACTACTTTTGGGGATAATAGTAGTAATAATAATCATGATGATTATTGTGTCCCTACAAGTACCACCCTCACCTTACAATTATCAACGGTTTTGTATAATAGCAGCAACAGCACTAGGAGTAGCAGTATTAATGCTAAATCTAAGGTTCATGAGTGTTCCATATGCGGGGCAGAGTTCTCATCTGGGCAAGCCTTGGGTGGACACATGAGAAGGCACAGAAACTTTTTGAGTGCACCTACGAGTGGGGCAATTGCATATGGTGGTGATGGAAGCCCTGAAATTCCAGAAACCAAGAAACACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACAGAGAATCCAACTTGTTTCCTTTTCAGTCGAAAGAAAAAGTCATTGTCTTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA 819 0.4396 MQMQEEHIQIIKGKRTKRQRLPSPLRLTKSTCSTAGRSGTDNSAGFDPPTTSNDLRNEEDEDLANCLILLAQGHNTPKPSHNKESELYVYECKTCNRCFPSFQALGGHRASHKRFSKASAEEKQGLVTTFGDNSSNNNHDDYCVPTSTTLTLQLSTVLYNSSNSTRSSSINAKSKVHECSICGAEFSSGQALGGHMRRHRNFLSAPTSGAIAYGGDGSPEIPETKKHKDVLNLDLNLPAPEDDHHRESNLFPFQSKEKVIVFSATSLVDCHY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00549 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 199 IPR013087 -
Lapu6g00549 272 SMART c2h2final6 177 199 IPR013087 -
Lapu6g00549 272 SMART c2h2final6 90 112 IPR013087 -
Lapu6g00549 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Lapu6g00549 272 Gene3D Classic Zinc Finger 88 199 - -
Lapu6g00549 272 Pfam C2H2-type zinc finger 89 113 - -
Lapu6g00549 272 Pfam C2H2-type zinc finger 176 200 - -
Lapu6g00549 272 SUPERFAMILY beta-beta-alpha zinc fingers 89 199 IPR036236 -
Lapu6g00549 272 PANTHER ZINC FINGER PROTEIN ZAT5 49 253 - -
Lapu6g00549 272 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lapu6g00549 272 MobiDBLite consensus disorder prediction 23 52 - -
Lapu6g00549 272 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Lapu6g00549 272 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00549 Lapu-Chr6 5759760 5760854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00549 6 272 C2H2 Transcription Factor Family AT2G28200 43.333 1.22e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00549 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00549 - - var:108322426 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00549 6 5759760 5760854 Lapu11g00401 11 7131764 7132847 ECH
Lapu6g00549 6 5759760 5760854 Lapu6g00549 6 5759760 5760854 ECH