Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00546 ATGCAATCTCCTATTGATTTGTCCAGAAACTGTGTGCAAGTGATCCCCAAGTTAGGGGGTCTCAGGTACTGGACCTATAATCCTCAATATGCTACTGTCTCCAACAGAGGTCATGATGTTGCAGTGGAGTGGGGAGGGGATGCAGGCTCAATAGACATAGATGGATCACCTTTCTCCCTCATACAAGTCCATTGGCACTGGCCCTCCGAACATACCATCGACGGCCGGAGCCCACAGCCTGATGGAACAAACAAAACCGCTGTTGTTGGTATTTTGTACAAGTACGGTTCCCCTGATCCATTGCTCTCTAAGATCATGATAGGTAGTAAGATGTTCTACAGGTACCTAGGATCACTCACTGCACCTCCTTGCACCGAAGGCATCATATGGACCATTGATAAGAAGATAAGAACTGTTTCAAGAGAACAAGTGGAGTTACTCAAGGATACTGTACTTAGATATCGCCTTGTAACATGGATGCTTCAGCTTTTAACCATGCCAAAATCTCGTAACCTGTGCTCCTCATACCCAGGGGCACATCCAGACCCCGAAGCTGTTGCCCACGAAGTTCACAGGAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGCTATCAGTGTCAGAGAGAGACGAGTCTTCGTGTCTAACGGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTAGCTGACTGCGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGGAAAGGTGGTGAATTTTACGTGGTCACTGATTCCTCTGACGAGGACGCTGTGAACCCAAAACCTGGGACGCTGAGATACGCTGTGATACAGAACGAGCCACTGTGGATCGTGTTTCCCAGTAACATGATGATTAAGCTGTCCCAGGAGCTGATATTTAACAGCTACAAGACCATTGATGGACGCGGTGCTGATGTGCACATCGTGGGAGGAGGCTGCATTACTTTGCAGTATATAAGCAATGTTATAATACACAACATTCACATCCATCATTGTCATCCCTCAGGGAACACGAACGTTCGGTCAAGCCCGGAGCATTACGGATTCAGGACAGAATCGGACGGGGACGGAATATCGATATTCGGGTCGAAGGACATATGGATCGACCACTGCACGCTGTCGCGGTGCAAGGATGGGCTGATAGACGCTGTGATGGGGTCGACCGGGATAACCATCTCGAACAACTACCTTTCCCACCACAACGAGGTCATGCTCCTGGGCCACAGCGATGACTACCTCCCAGACTCCGGCATGCAGGTAACCATCGCCTTCAACCACTTCGGGGAGAAGCTGGTCCAGAGAATGCCCCGGTGTCGGAGAGGCTACATCCACGTCGTCAACAACGACTTCACGGAGTGGGAGATGTACGCCATCGGAGGCAGCGGCGAACCCACCATTAACAGCCAGGGGAACCGGTACATGGCACCCCAAAACCCCTTCGCTAAGGAGGTTACCAAACGAGTGGACACCCAACAGTCCAAGTGGAAGGGCTGGAACTGGAGGTCCGAGGGTGACATTTTACTCAACGGTGCCTTTTTTGTTGCCTCTGGCGAAGGACTCGAGGTTAAGTACGAGAAAGCCTACAGCGTCGAACCTAAGTCCGCTGATCGTATCTCTCTTCTCACCATGTCCTCCGGTGTTCTTGGTAATGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGACCTGGTGATGATGCTATGGACTCCGGCATGGAATACACCGACGACATGTCCACTGCCGCAACCATCTCTCTTCCGTCTCTTTTTCTTCTCTTCTTCTCTTCCACCATGATACTCTTGACGGTTATTCTATAA 1848 0.5054 MQSPIDLSRNCVQVIPKLGGLRYWTYNPQYATVSNRGHDVAVEWGGDAGSIDIDGSPFSLIQVHWHWPSEHTIDGRSPQPDGTNKTAVVGILYKYGSPDPLLSKIMIGSKMFYRYLGSLTAPPCTEGIIWTIDKKIRTVSREQVELLKDTVLRYRLVTWMLQLLTMPKSRNLCSSYPGAHPDPEAVAHEVHRKVNASIARREMLSVSERDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDEDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPQNPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRISLLTMSSGVLGNARDNNLGMWSRGPGDDAMDSGMEYTDDMSTAATISLPSLFLLFFSSTMILLTVIL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00546 615 SMART amb_all 292 489 IPR002022 -
Lapu6g00546 615 Gene3D - 217 559 IPR012334 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 264 289 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 444 463 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 537 560 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 300 316 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 240 257 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 508 532 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 466 485 IPR018082 -
Lapu6g00546 615 PRINTS Pollen allergen Amb family signature 364 385 IPR018082 -
Lapu6g00546 615 Pfam Pectate lyase 301 476 IPR002022 -
Lapu6g00546 615 Pfam Eukaryotic-type carbonic anhydrase 109 150 IPR001148 -
Lapu6g00546 615 Pfam Eukaryotic-type carbonic anhydrase 2 77 IPR001148 -
Lapu6g00546 615 SUPERFAMILY Pectin lyase-like 212 541 IPR011050 -
Lapu6g00546 615 Gene3D Alpha carbonic anhydrase 103 158 IPR036398 -
Lapu6g00546 615 Gene3D Alpha carbonic anhydrase 1 102 IPR036398 -
Lapu6g00546 615 CDD alpha_CA_prokaryotic_like 1 151 IPR041891 -
Lapu6g00546 615 FunFam Pectate lyase 217 559 - -
Lapu6g00546 615 SMART Carb_anhydrase_2a 1 170 IPR001148 -
Lapu6g00546 615 PANTHER PECTATE LYASE 18-RELATED 180 560 IPR045032 GO:0030570
Lapu6g00546 615 ProSiteProfiles Alpha-carbonic anhydrases profile. 1 176 IPR001148 -
Lapu6g00546 615 SUPERFAMILY Carbonic anhydrase 1 152 IPR036398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00546 Lapu-Chr6 5711764 5722172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00546 180 615 Polysaccharide Lyase AT3G53190 77.273 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00546 K01728 - gmx:100775595 837.41