Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00540 ATGGCGTCTCCGTTTGAATTCCTGGAGTACGACGAAGAAACCGACGGCGAAGACGAAGACGGCGAAGACGAAGATGACGAAGAGTACGTTCCCGGAGTGGCCTCCCCTAGGGCTTCGCACGACACTCCTCGTGTCGTTTCATCCAATAACGTAATCGTTATCCCCGACGAATCGCAGGATTTCGTGGAAGAGGAGGGAAATAAACGCCGCAGGTTCGATGGAGGCGAGAATTCTTGTTCCTTCGCGGCTGGGAGCACCAACGGTAGCCAAGGAAACGACCACACCGACATGGACGGTCTCTTTTGCCCTATTTGCTTGGATGTTTGGACCCATAACGGCGAACATCATGTCTGCTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAGATGGCTTCAACAGCGCAAAAATTCCAGCAAGTGTCCTCATTGTAATAGGAAATGTACGCTGAAGGATGTGAGGAAACTCTTTGCTTCCCGAGTAGTTGCGGTCGAAGAAGAATCTCAGAAGAAAATTCAGTCACTCGAGGCCAAATGTGCTGCCCTAGAAAGTAAGGGCAGTGATTGGCGCAAGAAAGAAGAGGGATGGAAGTATCGAGAAGCCGCCTTGCGTCTTCAAGTTCAGAATCTTACAGAGAGAAACGCTTATTTGGAGCAGCTGTTACTAGATATGCAGAGCAAGCAATCTGCATTGATAAGTGGCAATGGAAACTCTCAGTGGAGATGTGAATCTGAGCACAACTTTGGTGCAAAGTACCGTGGAAAGGGATCCATTTGTAATTTTGAATTGCAGAAAGAATTTCATCTGGATGGTGCACGCCTTTTTGATATGGACATCTCTAATCAAATTTTATTAATTGCACAAAAGCCAAAGGAAGTAGGGGGAACGCACTTGCTAACTAAAATGAGCTTGTTGTCTCCATTTGAGATGCAAGATATCTTACTGCCTTCTGCTACAAATGGTGTTAAAGACCTGCATATTTCTCCTTCTAATAGTAACCTGGCTCTCTTTTCTTCGTTAGGGAAGAAACTATCAGTGCTCAGCTTGGACAGTGGCAATCTTGTTATCAATTATGATCTACAGGATCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCGCATAACATATATGCTGGGTTACAGAATGGTTCTGTCTTGGTGTTTGACATGCGTCAAACTGTAGGCCCCATGAAATCTTTAGTTGGTTTGACTAACAACCCTGTGCATACTGTCAATTCTCTAGCACAAGCTTCAAGTATTTCTTCTGGTGTTAACACCATCCTATCGGCATCTGCCTTTGGCCTTTGCCAGTGGAACATTGATTCTGAAGAACGGCCGCTTGTGGTTCCTGAAACTGATAATCAAGGAGTTTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGATATTGTTGCTTCTTACAGACCGAAATTCAATATGTCCATGGATGTGCCTCTATCTCAACCGCTGTCCACTCCTCTCAGTGCTGGACAAGGAGTACAGGGCACTCATGTCTTGTTCAATAGGACGGGTAATCATCATTTCCAAAAGGTGGGTTCCTCATACGCCAATGTATGTAAAATTCGACTACCAAAATGTGTAATTATGGACGTAGAGAATCAGAGCAGATTGTTTGCATCTTGGGATGAAGGTACATGTGATTTGGTTTTGCATGAGTTGCCATCTTTTAGAGTTCTTCAGCAATTCAAAATGCCAGCTCAGGTCCGTGATCTTAGGTACTCACCTAGCCACGGCATACTTGGTTGTTTAAGTGAGAACACGTTGCAGCTTTTCCATTCCAAACACTCGTCGGTAAGCTAA 1833 0.449 MASPFEFLEYDEETDGEDEDGEDEDDEEYVPGVASPRASHDTPRVVSSNNVIVIPDESQDFVEEEGNKRRRFDGGENSCSFAAGSTNGSQGNDHTDMDGLFCPICLDVWTHNGEHHVCCLPCGHIYGMSCIKRWLQQRKNSSKCPHCNRKCTLKDVRKLFASRVVAVEEESQKKIQSLEAKCAALESKGSDWRKKEEGWKYREAALRLQVQNLTERNAYLEQLLLDMQSKQSALISGNGNSQWRCESEHNFGAKYRGKGSICNFELQKEFHLDGARLFDMDISNQILLIAQKPKEVGGTHLLTKMSLLSPFEMQDILLPSATNGVKDLHISPSNSNLALFSSLGKKLSVLSLDSGNLVINYDLQDPAWSCSWDLNNSHNIYAGLQNGSVLVFDMRQTVGPMKSLVGLTNNPVHTVNSLAQASSISSGVNTILSASAFGLCQWNIDSEERPLVVPETDNQGVCISLAYCPSSDDIVASYRPKFNMSMDVPLSQPLSTPLSAGQGVQGTHVLFNRTGNHHFQKVGSSYANVCKIRLPKCVIMDVENQSRLFASWDEGTCDLVLHELPSFRVLQQFKMPAQVRDLRYSPSHGILGCLSENTLQLFHSKHSSVS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00540 610 SUPERFAMILY RING/U-box 95 154 - -
Lapu6g00540 610 SUPERFAMILY Tricorn protease domain 2 300 603 - -
Lapu6g00540 610 Coils Coil 210 230 - -
Lapu6g00540 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 189 IPR013083 -
Lapu6g00540 610 MobiDBLite consensus disorder prediction 1 45 - -
Lapu6g00540 610 Coils Coil 168 195 - -
Lapu6g00540 610 PANTHER RFWD3 PROTEIN 14 604 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lapu6g00540 610 ProSiteProfiles Zinc finger RING-type profile. 102 148 IPR001841 -
Lapu6g00540 610 Gene3D - 194 486 IPR015943 GO:0005515
Lapu6g00540 610 MobiDBLite consensus disorder prediction 8 29 - -
Lapu6g00540 610 Pfam Ring finger domain 102 148 IPR001841 -
Lapu6g00540 610 CDD mRING-C3HGC3_RFWD3 98 160 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00540 101 153 C3H Transcription Factor Family AT1G51930 40.741 8.98e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00540 K15691 - gmx:100818898 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00540 6 5648812 5654850 Lapu6g00540 6 5648812 5654850 ECH