Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00534 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCTCAGAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGATTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCATGGTCAATTTTCTGATGCAGAAGATAAAATAATATGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCGTCTCAGCTTCCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAAGAAAATGATGGTGATGGATCCTTCTCCCCAGAGGAAGCCTCGTCAAATTACCCTTTTATCCATCCTTCAAAGCTCAACACCATCTTCATCACCATTGTCATCAGATAACACCAACAGCAGCCACAACAACTCCTACTACCACCCCCATGGTTCTTTCGCAGGCGCCGGCTCCTTTTCCTACTCTTCAAGTCTTCTGAGTGGAAACAACTCTTCTGCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCGCAAGAGAGTTTCATAGAACCCGCTCAGAAGTGCCAATTCAAAGATAGCAGCTGCAATAGCATGTTTGTGTTCGGTGGTGAAACCACAGCCACTAGCTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGTCAAGTCATGGAGCCAGAATTTGGTGATGCAAGTTTTGTGGAGCAGATAGGTGTCGCTGATGATCACCTTTACAGTGGGGTGGAAAATACTACTCACAAGTTGATGATGTTCTCCAGTGCTGGCAGTGTTAGTGCTAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCATTGGATTATGGTCTAGAGGAAATTAAACAGCTAATTAGCACTAATAACAGTTGCAACAACTTTTTGTTTGATGACAAGAAGACAGAAGAAAGGGTCACGTACTACTGA 1014 0.4428 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMVMDPSPQRKPRQITLLSILQSSTPSSSPLSSDNTNSSHNNSYYHPHGSFAGAGSFSYSSSLLSGNNSSASASADSFFQAQESFIEPAQKCQFKDSSCNSMFVFGGETTATSCSSSDASCNNQISQVMEPEFGDASFVEQIGVADDHLYSGVENTTHKLMMFSSAGSVSASGWTDKQNGLWEQNPLDYGLEEIKQLISTNNSCNNFLFDDKKTEERVTYY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00534 337 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu6g00534 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lapu6g00534 337 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lapu6g00534 337 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu6g00534 337 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu6g00534 337 SMART sant 13 64 IPR001005 -
Lapu6g00534 337 SMART sant 67 115 IPR001005 -
Lapu6g00534 337 Gene3D - 70 133 - -
Lapu6g00534 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu6g00534 337 CDD SANT 16 62 IPR001005 -
Lapu6g00534 337 FunFam Transcription factor RAX3 7 68 - -
Lapu6g00534 337 PANTHER OS09G0431300 PROTEIN 1 312 - -
Lapu6g00534 337 MobiDBLite consensus disorder prediction 139 158 - -
Lapu6g00534 337 Gene3D - 7 68 - -
Lapu6g00534 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00534 Lapu-Chr6 5591248 5593202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00534 1 118 MYB Transcription Factor Family AT5G57620 87.288 5.25e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g00534 Myb_DNA-binding 5.9e-15 CL0123