Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00518 ATGTTGCTAGTGATGGAAAGGGAGTACTTTGTCAAGTATCAAGGTCTCGCTCATGCTCACAACCGCTGGATTACAGAATCAACAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAGAGTAAACCGCAGGTTACCAGGTGGAAAAGAGATTGGAGTATACCTCAACGCTTACTGCTAAAAAGAGAAATTGTGCATTTTGATGGGCATGGTGACAATGATTCAATATGCTGTTATGAGTGGCTTGTCAAATGGACTGGTCTTGGTTATGATAATGCTACGTGGGAGTTACAAGATGCTCCATTTTTGACGTCGGCCCAAGGCAGAGAACTCATATGCGATTACGAAAGTCGTTGTAAGAGAGGTGATAGACTGTCAAAAAGTCATTTTGAAGACAATGAGGAGAGAAAAAGTTTTGTTGCCGAATTATCAGTGTTGCCATTTGGAGATTCACCAGGACTTTATAACCAATATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAGAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGTGTTATAAAGGTGGCTTTGTTTATATTATCTTTGCATTGTAATGGCAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCTCTCTCTGTATGGGAAACAGTGTTCTTACGTTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAACAGAGATGTACGGAGTAGCATCAGGGCATTAGAGTTTTTTAATGAAGAAAATGATATATTATTTGAAATAGTGTTGTCATCTTCTGATATTGTTGTTAAGGACTTACATGAACTAACATGCATTCCATGGGAAGGAATAATAATTGATGAATGCCAGCAATCCAGAAATTCAGGACGCTTGGAGAATATCAAGATTCTAAATGCTGAAATGAAGCTCCTTCTTGTTAGTGGCCAAATCAAGGAAGATCGATCTGATTATACCAAACTGCTTTCATTCCTCAAGTCTGCACATCGTGGGTCAAGTATTGCTCAAATAGAAACTTCTTTCTGTGCTAGCATTTCCAATTTGAAGAGCCAACTGGAAAAATATGTTGTATTCAAATCCAAATCTGGCTCCACTAGGTTTGTGGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAGAAGTCCAACTCAGCTGATGCCCTCCATGAGCTTATTATTTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGAGCCAGCACTGCATAATTCTCTCGTTGAGGGTCTACCTATTGAAGAACATTTAAATATTGGTATAAAAGCAAGTGGAAAACTGTTACTTCTTGAAAAAATCCTCCTGGAAGCAAGAAGCCGTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGGCAGAGCTTATACCCCTAAAACAAAGGAAGCTGCTTTAAGCACATTTAATGATAGAGACAATGGAAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTGGACCCTCAGAATGACCTAAGAGGCTTACATAGGATGTCTATCAGCTCGCAGTTGAAACAGATAACTGTCTTCAGATTGTACTCATGTTACACGGTTGAAGAAAAAGTTTTAATGCTTGCAAAGGAGGGGATAACTCTTGACAGTAATGTGCGGTTGATTAACCAGAGTATTTCTCAAACCCTGCTAAAATGGGGCACCTCCCATCTGTTCAATAAGCTGGATGACTTACATGCCAGTGTGACTGCTGTTTCTACTCCAGACGTTGCAGATCAATCACTTCTACATGGTGTAATGTGTGAATTATCATCCCAATTGGTTTCTGGTGCTGATGATATTGATTGTCATGGATGGTCATTCATATCAACAATACAGCATAATGGAGGGAAATATGCGAGGAACACTGTATTGGTTGGAGAAAGAATAATGAAGGAATTGGGCAGCGAGCCATGTGCTTTTTCCTGGAGTGATCTTGAAGGAAGGTATCCTCAATGGAAATTTTTGTCTGTTTCGTCTCAGAGGATGAGGAGTAGGGTCAAACATTCTGATTACATGCTAAACGAATCTGAATGTGAAGATCATACAATTATTGGAAAGAGGACAACATCAAATGCTTCCAAGAAGAGAAAATTGTCCAAGGATAACGTTGATCCTGATTTGAGGAAACTGACCAAGGATAAAGTTGACCCGAAGAGGAGGAAAGTGTCCAAGGATTATGTTGAAACAGAGGGGAGGGAAGTGTCAAATTATGTCATTGATCCTAAGACAAGGAAGGTGTTCAATGATATTGTTGATTCTAGGTGCGGGAAAATGTCCAAGAATATTTTTTATTCCAAATATCGGAAACAAAGGTTGAGGAGCAAGAAGAATTCAAATGTTGCCAATAGAGCAAGGCATCTTTTGGCCAAGGAAACTACAGGAGAACCTGCAATGAACATGCAATTTTCAGAGAAAAGGAAACTGCTTGACAGACCAAATAGCATCAAATTCCTGCCAAAGTCAGATGTATCAGGTCTTTGTGACATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCTGAGGATTCTTGAGCACACATTCAAACATTACAATGTTAATGTCCAAGAAGTTTCTACTCTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGAGATTGATAGGAAGGATTCGCTCACTCTAGCAAAACTGTACTTGAATTTTGATTGCAACGAAGAGGAAGCCACCTATGTCTACTCAGAACTGTGGAAACATGTGAAGAAATTTTCTAATTATATACAAAATGGACTCGGTGTTGAGAAATATAATATAAATGGTGCTTCATCAGAACCCAACATGCCTCTGCTGAATGATTTGACCAAGGAGAAGCAGAAGGATTTTCTGGATACTTGTGTTACAAAACTTGTGAAATCTGTAACAAATGAACATGATCTTCAAATGAAATCTCCCACAACGGTGGTTTCATGTGACCAGAGTTGTACTCATGAAATTTGTTTATTTCCAAAGGCAACTGCTAGGTTTCCTGTGGAAACAATTGCTCTCTCCATGGAGTCTGGCTCAGAAGATGACAGCATGGATTCTACGACCTTAATAACTGCAGAAGATTCAGCCCTTGAGCACGGGGGCAATGATGTCAACCCTCCTACTGGTTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACAGAATCTGATGGCAAAGTTTGTGAAGATAGTCAAATTTTAGTGAATGAATTGGTTGCTATTGAGAATGCTATGAATATGTATACTCATTCTTTGCAGCTTGACAGTGTTGAGGCAAATGCTGTAACTTCCATTGGTTCTGCTGTTCCTGAGGCCAGACAGTGGAGCAGTGTAATGAGTCCTGTATGCAGTGAGTCAACTGGTCTGGAGTTTGCTGAGACACCCTTTCCATACACACAACCATCAGATGCTAATTTGTTGCGGTTGCCTCAGATGGCAATGTCCGATATTCCATTTTTACCAGAGCACAATTCAGCTAGTACTGTCACGCCACTAGATGATACTTTTTATCATAATAGTGAGGATCATTGTTACATTCACGATGCTGAAGTAATATTCGAAGCACCAAACGACCTTGCGGAACCAGTTAACTCTTCCTGTGGTTCACCTGTGACACTGCAACCTTTAACAAGTGTGCCGATGAAAGAAAATATGACACATGTACCTGACAGCTTTAGTATTCCTGGATATGTGAACAGTGATTATTTTCAACATCACTATGTGGCGTCTGAAATATCCCACCTTGCCTACCCAGACCCACTACTGGATGAGATGGAGAGAATAGAAAACACGAACGAAGAAGCCTTCATAGATCCACTACTAAATGAGATGGAGAGAATAGAAAAGGATAGCGAAGAAGCCTTCAAGACACATGAGGATGAGATATCGCAACTCCGATCTGAATATGGAAAGGAGGTTGTAAATTTGAGTGAAAAGTACAGGATTTTGCTTCAGAATGTTGATACTGAAGTAGCACTCAAAAGAATAGAATTTGATACACAATTTAAATTAGTGTTGAGCAATATGGTATTAGCTGAAGTTTGGATCCGTATGCTTGATGGTTGTGAAAAGGCTGTGGGACAATACTCAGAACATGATGGTTGTGGAAGGGCTGTAGGACAATACTCAGAATAA 4359 0.3992 MLLVMEREYFVKYQGLAHAHNRWITESTMLLEAPKLLAKFKSKPQVTRWKRDWSIPQRLLLKREIVHFDGHGDNDSICCYEWLVKWTGLGYDNATWELQDAPFLTSAQGRELICDYESRCKRGDRLSKSHFEDNEERKSFVAELSVLPFGDSPGLYNQYLSYVNKLRMCWHRGQNALIVDDQIDQERVIKVALFILSLHCNGKRPFLIISTSTALSVWETVFLRLAPSANLVVYKGNRDVRSSIRALEFFNEENDILFEIVLSSSDIVVKDLHELTCIPWEGIIIDECQQSRNSGRLENIKILNAEMKLLLVSGQIKEDRSDYTKLLSFLKSAHRGSSIAQIETSFCASISNLKSQLEKYVVFKSKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLMLLCSGQKSNSADALHELIISTRKCCDHPYLLEPALHNSLVEGLPIEEHLNIGIKASGKLLLLEKILLEARSRGLRVLILFQSTCGSGSIGDILDDVLCQRFGKDCYVRYGRAYTPKTKEAALSTFNDRDNGKFVFLMENRACLPSVKLSSVDTVILFDSDLDPQNDLRGLHRMSISSQLKQITVFRLYSCYTVEEKVLMLAKEGITLDSNVRLINQSISQTLLKWGTSHLFNKLDDLHASVTAVSTPDVADQSLLHGVMCELSSQLVSGADDIDCHGWSFISTIQHNGGKYARNTVLVGERIMKELGSEPCAFSWSDLEGRYPQWKFLSVSSQRMRSRVKHSDYMLNESECEDHTIIGKRTTSNASKKRKLSKDNVDPDLRKLTKDKVDPKRRKVSKDYVETEGREVSNYVIDPKTRKVFNDIVDSRCGKMSKNIFYSKYRKQRLRSKKNSNVANRARHLLAKETTGEPAMNMQFSEKRKLLDRPNSIKFLPKSDVSGLCDILHFPKNVKVVALRILEHTFKHYNVNVQEVSTLQAFEISVCWLAASLLKHEIDRKDSLTLAKLYLNFDCNEEEATYVYSELWKHVKKFSNYIQNGLGVEKYNINGASSEPNMPLLNDLTKEKQKDFLDTCVTKLVKSVTNEHDLQMKSPTTVVSCDQSCTHEICLFPKATARFPVETIALSMESGSEDDSMDSTTLITAEDSALEHGGNDVNPPTGYLEKQSPIRSTDITESDGKVCEDSQILVNELVAIENAMNMYTHSLQLDSVEANAVTSIGSAVPEARQWSSVMSPVCSESTGLEFAETPFPYTQPSDANLLRLPQMAMSDIPFLPEHNSASTVTPLDDTFYHNSEDHCYIHDAEVIFEAPNDLAEPVNSSCGSPVTLQPLTSVPMKENMTHVPDSFSIPGYVNSDYFQHHYVASEISHLAYPDPLLDEMERIENTNEEAFIDPLLNEMERIEKDSEEAFKTHEDEISQLRSEYGKEVVNLSEKYRILLQNVDTEVALKRIEFDTQFKLVLSNMVLAEVWIRMLDGCEKAVGQYSEHDGCGRAVGQYSE* 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00518 1452 Gene3D - 1344 1425 - -
Lapu6g00518 1452 Gene3D - 156 371 IPR038718 -
Lapu6g00518 1452 MobiDBLite consensus disorder prediction 1103 1131 - -
Lapu6g00518 1452 Gene3D - 372 606 IPR027417 -
Lapu6g00518 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 609 IPR027417 -
Lapu6g00518 1452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 624 IPR001650 -
Lapu6g00518 1452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 334 IPR014001 -
Lapu6g00518 1452 SUPERFAMILY Chromo domain-like 47 116 IPR016197 -
Lapu6g00518 1452 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1024 - -
Lapu6g00518 1452 Coils Coil 1349 1376 - -
Lapu6g00518 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 348 IPR027417 -
Lapu6g00518 1452 SUPERFAMILY Chromo domain-like 7 44 IPR016197 -
Lapu6g00518 1452 Gene3D - 55 116 - -
Lapu6g00518 1452 Pfam SNF2-related domain 192 428 IPR000330 GO:0005524|GO:0140658
Lapu6g00518 1452 Gene3D - 5 46 - -
Lapu6g00518 1452 MobiDBLite consensus disorder prediction 1114 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00518 Lapu-Chr6 5376768 5391517 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu6g00518 SNF2_N 7.6e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00518 - K11643 gmx:100813574 1999.17