Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00517 TCACCAATTCCGCAAACTCCTAAATTCCCAGACATTTCCATCTCAATCCAACTCATAATATCTCTCCCTCCATTTTTTCACTCTCTGCATTTTGTTGAGATGGAAGCAACTACTCTCACCAACGCCCACCAAAACGGTTCCTTCTGCTTGCCTTCCGCCAAGACCACTGATCCGCTCAATTGGGGAGCTGCCGCGGAGGCGCTCAAGGGGAGCCACCTCGATGAGGTCAAGCGCATGGTGGCTGACTACCGCCAGCCGCTTGTCCGCCTCGGTGGCGAGACGCTCACCATCGCTCAGGTGGCGGCGGTGTCTGGACACGACCAAGGCGTGAGGGTGGAGCTTTCGGAGTCGGCTCGGGAAGGTGTTAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAATGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGGTTTTTAAACGCTGGAATATTTGGAAATGGAACTGAATCATGCCACACACTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGGATCAACACTCTTCTTCAAGGGTACTCAGGAATCAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACACCAACGTTACCCCATGTTTGCCACTTCGTGGGACAATCACGGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAACGCTAAGCAAGCTTTTGAATTGGCTAACATCAATTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTTGTTAATGGCACGGCTGTGGGTTCTGGCTTAGCTTCTATCGTTCTCTTCGAGGCAAATATACTAGCTGTCTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACACACAAGTTAAAACACCACCCTGGTCAAATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCTAAGAAGTTGCATGAAATAGATCCACTGCAAAAGCCAAAACAAGATCGATATGCCCTCAGAACTTCACCGCAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAATTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTCTCCATGGACAACACACGTTTGGCTCTTGCATCTATTGGCAAACTCATGTTCGCTCAATTCTCCGAGCTTGTCAATGATTTTTACAACAACGGTCTGCCTTCGAATCTCACTGCTAGCAGAAATCCCAGCTTGGATTACGGTTTCAAGGGCGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTCCAATACCTTGCAAATCCAGTGACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATCTCAGCTAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCCGTCAAGAACACAGTGAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTGCTGAAAGTGGTCGATAGCGAGTATATATTTTCCTATATAGATGACCCATGCAGTGCCACATACCCATTGATGCAAAAACTGAGGCAAGTGCTTGTGGAGCATGCCTTGGTAAATGCAGAGAGTGAAAAGGATGTTAACACATCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGAACATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTACGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCATTATACAAGTTTGTGAGAGAGGAGTTAGGGACTGGGTTGCTAACCGGAGAAAAGGTCAAATCACCAGGTGAAGAATTTGACAAACTATTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAATGGAGCTCCTCTTCCAATTTGTTAA 2247 0.466 SPIPQTPKFPDISISIQLIISLPPFFHSLHFVEMEATTLTNAHQNGSFCLPSAKTTDPLNWGAAAEALKGSHLDEVKRMVADYRQPLVRLGGETLTIAQVAAVSGHDQGVRVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNTNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFELANINSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNESIEILKLMSSTFLVALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDSEYIFSYIDDPCSATYPLMQKLRQVLVEHALVNAESEKDVNTSIFQKIATFEEELKNILPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00517 748 NCBIfam phenylalanine ammonia-lyase 57 737 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lapu6g00517 748 FunFam Phenylalanine ammonia-lyase 49 294 - -
Lapu6g00517 748 Pfam Aromatic amino acid lyase 95 570 IPR001106 -
Lapu6g00517 748 Gene3D - 561 682 IPR023144 -
Lapu6g00517 748 PANTHER HISTIDINE AMMONIA-LYASE 46 748 IPR001106 -
Lapu6g00517 748 Gene3D - 49 294 IPR024083 -
Lapu6g00517 748 FunFam Phenylalanine ammonia-lyase 561 682 - -
Lapu6g00517 748 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 230 246 IPR022313 GO:0016841
Lapu6g00517 748 Gene3D Fumarase/aspartase (Central domain) 295 743 - -
Lapu6g00517 748 SUPERFAMILY L-aspartase-like 57 748 IPR008948 GO:0003824
Lapu6g00517 748 CDD PAL-HAL 93 558 IPR001106 -
Lapu6g00517 748 FunFam Phenylalanine ammonia-lyase 295 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00517 Lapu-Chr6 5370919 5374434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00517 57 748 Monolignol Biosynthesis Gene Families AT2G37040 83.382 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00517 K10775 - gmx:100787902 1342.02