Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00516 ATGGATGCAACCACCCTTACCAACGGCCACCAAAACGGTTCTTTCTGCTTGCCTTCCGCCAAGACCACTGATCCGCTCAATTGGGGAGCGGCTGCTGAGGCGCTCAAGGGGAGCCACCTCGATGAGGTCAAGCGCATGGTGGCTGAATACCGGAAGCCGCTTGTCCGCCTCGGTGGCGAGACGCTCACCATCGCTCAGGTGGCGGCGGTGTCTGGACACGACCAAGGTGTGAGGGTGGAGCTGTCGGAGTCGGCTCGGGAAGGTGTCAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAATGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGTGCTGCTTACTGGGCACGGTTTTTAAACGCTGGAATATTTGGAAATGGAACTGAATCATGCCACACACTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGGATCAACACTCTTCTTCAAGGGTACTCAGGAATCAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACACCAACGTTACCCCATGTTTGCCACTTCGTGGGACAATCACGGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAACGCTAAGCAAGCTTTTGAATTGGCTAACATCAATTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTTGTTAATGGCACGGCTGTGGGTTCTGGCTTAGCTTCTATCGTTCTCTTCGAGGCAAATATACTAGCTGTCTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACACACAAGTTAAAACACCACCCTGGTCAAATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCTAAGAAGTTGCATGAAATAGATCCACTGCAAAAGCCAAAACAAGATCGATATGCCCTCAGAACTTCACCGCAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGAAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTCTCAATGGACAACACACGTTTGGCTCTTGCATCTATTGGCAAACTCATGTTCGCTCAATTCTCCGAGCTTGTCAATGATTTTTACAACAACGGTCTCCCTTCAAATCTCACTGCTAGCAGAAATCCCAGCTTGGATTACGGTTTCAAGGGCGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTCCAATATCTCGCAAATCCAGTGACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCATTGGGTTTGATCTCATCTAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCCGTCAAGAACACAGTGAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTGCTGAAAGTGGTCGATAGGGAGTATATATTTTCCTATATAGATGACCCATGCAGTGCCACATACCCATTGATGCAAAAACTGAGGCAAGTGCTTGTGGAGCATGCCTTGGTAAATGCAGAGAGTGAAAAGGACGTTAACACATCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGAACATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTACTTACGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCATTATACAAGTTTGTGAGAGAGGAGTTAGGGACTGGGTTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAATTTGACAAATTATTCACAGCAATGTGCCAGGGTAAAATCATCGATCCTCTTCTGGAATGCCTAGGAGAGTGGAATGGAGCTCCTCTTCCAATATGTTAA 2166 0.4686 MDATTLTNGHQNGSFCLPSAKTTDPLNWGAAAEALKGSHLDEVKRMVAEYRKPLVRLGGETLTIAQVAAVSGHDQGVRVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELISAAYWARFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNTNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFELANINSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLVALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVEHALVNAESEKDVNTSIFQKIATFEEELKNILPKEVESARATYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00516 721 FunFam Phenylalanine ammonia-lyase 534 655 - -
Lapu6g00516 721 Gene3D Fumarase/aspartase (Central domain) 268 716 - -
Lapu6g00516 721 FunFam Phenylalanine ammonia-lyase 268 582 - -
Lapu6g00516 721 PANTHER HISTIDINE AMMONIA-LYASE 20 721 IPR001106 -
Lapu6g00516 721 Gene3D - 16 267 IPR024083 -
Lapu6g00516 721 NCBIfam phenylalanine ammonia-lyase 24 710 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lapu6g00516 721 Gene3D - 534 655 IPR023144 -
Lapu6g00516 721 FunFam Phenylalanine ammonia-lyase 16 267 - -
Lapu6g00516 721 Pfam Aromatic amino acid lyase 62 543 IPR001106 -
Lapu6g00516 721 SUPERFAMILY L-aspartase-like 24 721 IPR008948 GO:0003824
Lapu6g00516 721 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 203 219 IPR022313 GO:0016841
Lapu6g00516 721 CDD PAL-HAL 60 531 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00516 Lapu-Chr6 5363269 5366535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00516 24 721 Monolignol Biosynthesis Gene Families AT2G37040 83.095 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00516 K10775 - gmx:100787902 1341.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00516 6 5363269 5366535 Lapu6g00516 6 5363269 5366535 ECH