Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00511 ATGGCCAAGGACATCGAAACCGAGGTACCAACTGGGTTGACCCACAAGGACTACTACGACCCACCCCCGGCCCCATTCTACGACGCCGCAGAGCTCCGCAAGTGGTCCTTTTACAGGGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGACCGACGCCGGGGACTCCTGCGAAGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCGGGCATTTCCGGGGGTCACATAAACCCCGCCGTCACGTTCGGGTTGTTTCTGGCCAGGAAGGTGTCACTGGTGAGAGCAATCGCGTACATGGTGGCTCAGTGCTTGGGAGCCATATCTGGCGTGGGGCTGGTAAAGGCGTTTCAGTCGAGCTACTACAACAGGTACAACGGTGGCGTGAACTTGCTCGCTGATGGGTACAGTAAAGGCACTGGCTTGGGCGCTGAGATTATTGGCACCTTTCTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTCCCCGTTTTGGCACCACTTCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCTACCATCCCTGTCACCGGCACTGGCATCAATCCCGCCAGAAGCCTCGGTCCTGCTGTCATATTCAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCTTTCATCGGTGCAGCCATTGCTGCAATCTACCACCAGTACGTATTGCGGGCACAAGCGGCAAAGGCTCTCGGGTCATTCAGGAGCTCCTCAAACCTGTAA 855 0.5754 MAKDIETEVPTGLTHKDYYDPPPAPFYDAAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQTDAGDSCEGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYMVAQCLGAISGVGLVKAFQSSYYNRYNGGVNLLADGYSKGTGLGAEIIGTFLLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGPAVIFNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00511 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lapu6g00511 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 NCBIfam MIP family channel protein 43 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 FunFam Probable aquaporin PIP1-2 24 282 - -
Lapu6g00511 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g00511 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 278 IPR034294 -
Lapu6g00511 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Lapu6g00511 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00511 Lapu-Chr6 5278310 5280906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00511 1 284 Major Intrinsic Protein MIP AT2G37170 79.094 3.57e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00511 K09872 - gmx:100785783 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00511 6 5278310 5280906 Lapu7g01832 7 34246089 34249734 ECH
Lapu6g00511 6 5278310 5280906 Lapu6g00511 6 5278310 5280906 ECH
Lapu6g00511 6 5278310 5280906 Lapu5g00463 5 3975749 3976941 ECH