Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00509 ATGAAGATTCCTTGTTCTTTTTGTACTTGTTTCTCAGCATCGGTCAAAGAACAACAAACTAAGCACGAAGAGCCAGGTGGAGATAATGATGGAAACTTTCGCCTATTCACTTACAGAGAATTGAGTTCTGCCACGCGGGGTTTTCATCCCTCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCTGTCTACAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTTTCTATTGAGCTAGATTCCGTGAGAGGAGAGAGGGGGTTTGTGGCAGAATTGAATACACTAGCAAATATCAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTAGAAGGAGCCCACAGATACATAGTCTACGATTATATGGAAAACAACAGCCTTCGTTACACTTTCTTAGGTTCAGAGGAAAAAAGAATGGCATTCAGCTGGGAGGCTCGGAGAGATGTATCAATAGGTGTGGCCAGAGTGCTTGCCTTTCTCCACGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGGGAATTTCACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGCTACTAAGAGATGAAAAATCCTATATCAGTACCCAAGTTGCAGGCACATTAGGTTATCTTGCTCCAGACTATGCCTGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGCTTTGGAGTACTACTTCTAGAAATTGTCAGTGGCCAAAGAGCAGTAGATGATCATCAAGGCGTGGATCGTTTCATAGTTGAAAAGTCTTGGACAGCGTACGAGGGTAATGATCTTTTGAGAATGGTGGATCCAGTGCTGAACATGAACTATCCCGTGGAAGAAGCCAAACGGTTCCTAATGGTGGGACTTTATTGCGTGCAAGAAACGGCCAGACTCAGGCCACGAATGTCAGAGGTTGTAGACATGTTGAGCAACAATATTGAGATGGGAGAGTTTCATATTTCACGACCAGGTATTGTGAATGATCTGAGGAATGCCAGAATGAGGAGGCAAATAAATTCATCAGAGGAATCAAGTGCCAGTGCAGCAACCTTTGCAGACTCCTCCGGATGGAGTACCAGCAATCTTGCTCGTTAG 1128 0.445 MKIPCSFCTCFSASVKEQQTKHEEPGGDNDGNFRLFTYRELSSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLSIELDSVRGERGFVAELNTLANIKHQNLVILRGCCVEGAHRYIVYDYMENNSLRYTFLGSEEKRMAFSWEARRDVSIGVARVLAFLHEELQPHIVHRDIKSSNVLLDGNFTPKVSDFGLAKLLRDEKSYISTQVAGTLGYLAPDYACSGHLTRKSDVYSFGVLLLEIVSGQRAVDDHQGVDRFIVEKSWTAYEGNDLLRMVDPVLNMNYPVEEAKRFLMVGLYCVQETARLRPRMSEVVDMLSNNIEMGEFHISRPGIVNDLRNARMRRQINSSEESSASAATFADSSGWSTSNLAR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00509 375 Gene3D Transferase(Phosphotransferase) domain 1 126 331 - -
Lapu6g00509 375 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00509 375 Pfam Protein kinase domain 49 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00509 375 Gene3D Phosphorylase Kinase; domain 1 9 125 - -
Lapu6g00509 375 FunFam Serine/threonine-protein kinase receptor 17 125 - -
Lapu6g00509 375 SUPERFAMILY Protein kinase-like (PK-like) 30 337 IPR011009 -
Lapu6g00509 375 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g00509 375 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Lapu6g00509 375 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 367 - -
Lapu6g00509 375 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 126 324 - -
Lapu6g00509 375 MobiDBLite consensus disorder prediction 349 375 - -
Lapu6g00509 375 CDD STKc_IRAK 54 320 - -
Lapu6g00509 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00509 Lapu-Chr6 5254488 5256470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00509 36 339 Receptor kinase-like Gene Family AT1G56120 49.180 3.46e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu6g00509 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00509 - - gmx:100790388 592.808