Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00508 ATGGGCAACATCTCAAGCGGCGGCGCCAACCCTCGTCGCCGGCACAGCGGAGCGTCAAGGCGTAGTCACCCGCCTCCTCCTCCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTCGTGTACCATGGTGCTGCACCTTATCCGAACCCTACCCTGCATTACCCACAGTACCATTACCCCGGTTACTACCCTCCGGCGCCTCCCATGCCTCATCAGCATCATCATCAACAGCATCAACATCATCATCATCAACAACATCAACATCAACATCAACATCATCTGCACATGGACCCGGCGTGGATTCCAGGGCGTTTCCCTTGTGGGCCCATGATTCCTAACCCTGCACCTTTTGTGGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTTAATATCAGGAAAGAGACTCTTCGGCTTGAACCCGATGAGGGAAATTCTTCCCACTTCCTTGTCTCGTTTTCCTTCGATGCCACTGTTTCTGGGAGCATCACCATTTATTTCTTTGCAAAAGAAGGTGAAGACTGCATCCTCACACCAATGAAGGAAAACAATCCTTCTCCATTGACTGTGAATTTTGAGCGAGGTCTTGGCCAGAAGTTTAGGCAGTCATCTGGAACTGGTATTGATTTTTCAGTTTTTGAGGAGTCTGAGTTACTGAAAGTGGGTGACATGGATGTGTACCCTCTAGCAGTAAAGGCAGACGCGTCCCCTGGTAATCATGATGAGTCAGATAGAACTCCAACATCTGGAAACACAAACTCGCAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACAGAAGCTGATTTGGATGAGAGTGACCAAGGAAAAGAATGTGTTATCTGCTTGTCCGAGCCTCGAGATACAATTGTTCATCCCTGCCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTGA 1098 0.49 MGNISSGGANPRRRHSGASRRSHPPPPPPVTPQPEIAANPFVYHGAAPYPNPTLHYPQYHYPGYYPPAPPMPHQHHHQQHQHHHHQQHQHQHQHHLHMDPAWIPGRFPCGPMIPNPAPFVEHQKAVTIRNDVNIRKETLRLEPDEGNSSHFLVSFSFDATVSGSITIYFFAKEGEDCILTPMKENNPSPLTVNFERGLGQKFRQSSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNHDESDRTPTSGNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSTEADLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00508 365 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Lapu6g00508 365 MobiDBLite consensus disorder prediction 75 90 - -
Lapu6g00508 365 SMART ring_2 311 349 IPR001841 -
Lapu6g00508 365 MobiDBLite consensus disorder prediction 21 35 - -
Lapu6g00508 365 FunFam probable E3 ubiquitin-protein ligase LOG2 295 360 - -
Lapu6g00508 365 PANTHER MAHOGUNIN 1 360 IPR045194 GO:0061630
Lapu6g00508 365 SUPERFAMILY RING/U-box 310 355 - -
Lapu6g00508 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 360 IPR013083 -
Lapu6g00508 365 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Lapu6g00508 365 MobiDBLite consensus disorder prediction 1 36 - -
Lapu6g00508 365 CDD mRING-HC-C3HC5_MGRN1-like 309 350 IPR045195 -
Lapu6g00508 365 MobiDBLite consensus disorder prediction 65 90 - -
Lapu6g00508 365 MobiDBLite consensus disorder prediction 235 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00508 Lapu-Chr6 5246207 5251322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00508 35 330 C3H Transcription Factor Family AT3G09770 55.375 6.81e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00508 - - gmx:100807343 545.043