Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00507 ATGGCCAACGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCCAGGTTCCAGAAAAAGGATAGCGATACTGATTCGGCGAAGATTTGGAGCGACGCCGAAGACGAAAGCGCGAAAACGAGAGAAGCAGTGGAAGAGAAAACAGCGTCCACGAAGAAAAGGAAGCGCAAGGGAACCTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGCGCAGTCCAGTGGTGAAGTTCAAGCTGGTGAGGAGTCTATTGAGCTGAATAAGAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGGTATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAGTGTGCCGTCTCCTCTTCAAAGCTTTGATGAGTTGAAACCAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAGAGAACCAACGGCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACCCAGAAAAAGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTATCAAGTTAATGACTAAAAGTCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGCGATATACTAATATCCACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGAATATCTTGTCCTGGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCCGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCTGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGTGAGCTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGATCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTTAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACAGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCATCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1608 0.4303 MANDSSFLFSGIRFNRKKFGADIARFQKKDSDTDSAKIWSDAEDESAKTREAVEEKTASTKKRKRKGTSSETVEGFNVFRNSASVAQSSGEVQAGEESIELNKKKNKKEQNRQLERDAVFRKQHNIHVSGYSVPSPLQSFDELKPRYNCPSYLLRNLKELGFREPTAIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKSLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRSGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPDL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00507 535 Gene3D - 82 342 IPR027417 -
Lapu6g00507 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 488 IPR027417 -
Lapu6g00507 535 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 33 522 - -
Lapu6g00507 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Lapu6g00507 535 MobiDBLite consensus disorder prediction 97 111 - -
Lapu6g00507 535 MobiDBLite consensus disorder prediction 26 70 - -
Lapu6g00507 535 Pfam Helicase conserved C-terminal domain 373 476 IPR001650 -
Lapu6g00507 535 MobiDBLite consensus disorder prediction 87 111 - -
Lapu6g00507 535 SMART ultradead3 161 358 IPR014001 -
Lapu6g00507 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 132 422 IPR014013 GO:0005524
Lapu6g00507 535 SMART helicmild6 395 476 IPR001650 -
Lapu6g00507 535 MobiDBLite consensus disorder prediction 26 71 - -
Lapu6g00507 535 Gene3D - 343 520 IPR027417 -
Lapu6g00507 535 CDD SF2_C_DEAD 355 485 - -
Lapu6g00507 535 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Lapu6g00507 535 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Lapu6g00507 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Lapu6g00507 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 515 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00507 Lapu-Chr6 5240463 5244619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00507 136 514 Eukaryotic Initiation Factors Gene Family AT3G19760 31.234 1.34e-54 187