Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00505 ATGGCAACTGAAGCACATCACTTTCCCAACACTAATCACCAAGGCACTTCTACTAGAGCTGATAAACCATATCAAAAGGATGTAGAGTCATCCGAAATAACTGAGGAACTGCCTAGTAGACATGCACACGGGAGAAGGAGAAACCTTATCTTGGAGATACCCACTAGAACATTGGATGAAACAAGAGAGGATTTTTTTAGAACAAACAAACCTCCGACTCCATCTCACACATGCCAAATAGATGAGTTCCAAGGTTCCTCCTTGTCAACCAAAAACACTAAAACTCTTGTTTCCAAGCTCAGTTTTAAATTTCACAACACAAGTTCAGATGTTGAAGAGGCTTCCCTCCCACTGCAAGAGACCATGATTTTAAGAACATTATCAACTGATGGGAAGAAAATATCGTCCTTACCTGTCACCCCAAATGCTCAGTCAAATCTGGAGTCTGAACATGTAGGGAACATTGCCTATCGAGCAACACATTTTAAAAAAGGACAGCAATTACCGATGCATCGTTCCCGTTCAGTTCCTGTGCTTTCCGAGAATGGAAACACATATGTAGGTGCCCTGTTTCGTATTGTTCCTACTACACCAACATCTATGAAATCTCCACCTGATGATACTGTTGAAAACGAGGATGGAGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGCTTGATTGAATTGGGGGAAGGTTGTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAGGACGTTCAGAACCTACCTGTCACTCTTTTAAGAGTTCTAAATGGCCATGCACTTAACTTGACAAGGAGCAGAAGTCAACAATACAGGGTTTGGCAAAATGTTCCCATTCTTGTTATCATCAACATGCTAGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCAGTTGCCATTTCTCTTCCTTTTTCGTGTATATTGGGTCTACTTGCAAGCATGACATCCACAATAATGGTGAGATGTGAACATGTTTGGGCTTATGCAATTGTCCAATTTGTTGTGGTGGTCCTCGCTGGACGTCTTTGCTATTCACTGCTTAATAAGCAAGCTGTTGTATCTATCCTACTCGCTACATTTACTGGGTTTGGAGCTGTAATGTGTGGAGCTTTCATTCTTAATGAGTTTTTGAAGTGGAGAAGAAGGTGGCTTGGTCAGTTGAATCAACAGCGTGGTTCCCAAGAGGTAGTGCTGCCTCATCAACCTCACACAGATTCTGAACAGCATCATGAAGATAATGTGAGAGACACAGCAGTGCATGTGAGCTGA 1380 0.4225 MATEAHHFPNTNHQGTSTRADKPYQKDVESSEITEELPSRHAHGRRRNLILEIPTRTLDETREDFFRTNKPPTPSHTCQIDEFQGSSLSTKNTKTLVSKLSFKFHNTSSDVEEASLPLQETMILRTLSTDGKKISSLPVTPNAQSNLESEHVGNIAYRATHFKKGQQLPMHRSRSVPVLSENGNTYVGALFRIVPTTPTSMKSPPDDTVENEDGEDIPEEEAVCRICLIELGEGCDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLRVLNGHALNLTRSRSQQYRVWQNVPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVRCEHVWAYAIVQFVVVVLAGRLCYSLLNKQAVVSILLATFTGFGAVMCGAFILNEFLKWRRRWLGQLNQQRGSQEVVLPHQPHTDSEQHHEDNVRDTAVHVS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00505 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 279 IPR013083 -
Lapu6g00505 459 PANTHER OS02G0165000 PROTEIN 23 434 - -
Lapu6g00505 459 MobiDBLite consensus disorder prediction 439 459 - -
Lapu6g00505 459 Pfam RING-variant domain 224 271 IPR011016 GO:0008270
Lapu6g00505 459 SUPERFAMILY RING/U-box 220 275 - -
Lapu6g00505 459 SMART ringv_2 223 272 IPR011016 GO:0008270
Lapu6g00505 459 MobiDBLite consensus disorder prediction 1 45 - -
Lapu6g00505 459 MobiDBLite consensus disorder prediction 20 45 - -
Lapu6g00505 459 MobiDBLite consensus disorder prediction 435 459 - -
Lapu6g00505 459 CDD RING_CH-C4HC3_MARCH 224 272 - -
Lapu6g00505 459 ProSiteProfiles Zinc finger RING-CH-type profile. 216 278 IPR011016 GO:0008270
Lapu6g00505 459 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00505 Lapu-Chr6 5216528 5221659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00505 162 278 C3H Transcription Factor Family AT2G37950 27.407 4.29e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00505 - - gmx:100789854 696.041