Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00502 ATGTTCAATGTTATCGGTTTTTCGTTGTTGACAAGGGATTCGGTGGCGTGCAGGGGATTTCTCTACACATTTTTCATACTTAATTTCGTTTTGGTTTGCCAACTCATTCTCCTTCAGCCTCTCGTTTCTGCTTCCGATGGAAATCCTGAAAATGCTGCTGAGGTGTTAGAGCGGGCAACGCAAAGCGTAAAAGTGAAACATTATACTGAGGCACTTGACGATCTAAACGCTGCAATAGAAGCAGACCCAACTCTTTCTAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGATATGCAGATATGAGCAATCCGAGAGTAGCTACAAACAGTTTCTGGAGTTAAAGCCTGGAGATTCAGCCGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAACTGCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGAAACTTCTCAAAATCTTTGGAATTTATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGCACTAAGGCTAAGCTTCTTAAAGTGAAGGTGTTAATAGCTGATAAAGAGTATGAGGATGCCATTGCTGAATCAGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAAGGTCTTCGCTCAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTGGATTGAAAAATCTACTAAAGAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGTAAACTACGTGTGGCAGTGGAAGAATTCAAAGCTGCACTTGCTGTAGACCCTAACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGTAGAGGAAAAGATGCCTTGGAAAGTTGCAGTGAAGCTCTTAAGATCAACGAGGAACTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGAATGATATGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAGTATCCGTGAAGCAGTAATGAGGGCGGAGAAAGCTTTAAAGATAAGCAAACGTAAGGATCACTATAAAACTTTGGGAATTTCAAAAACTGCTTCTGCTGCTGATATAAAACGTGCATACAAGAAACTTGCCTTACAATGGCACCCGGATAAGAATGTCGACAAAAGAGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCAGCTGCATATGAGGTTCTGGGCGATGAAGACAAACGCGTGAGATATGACCGGGGAGAGGACCTTGAAGAGATGGGAAAGGGCGGGGGCGGCGGTTTCAACCCTTTTGGTGGTGGGGGGCAGCAGTTTACCTTTAATTTTGAGGGTGGCTTCCCTGGAGGTGGATTTGGAGGGGGCTATCCTGGAGGGTTTGAATTTCACTTCTGA 1464 0.4303 MFNVIGFSLLTRDSVACRGFLYTFFILNFVLVCQLILLQPLVSASDGNPENAAEVLERATQSVKVKHYTEALDDLNAAIEADPTLSKAYLFRASVLRQICRYEQSESSYKQFLELKPGDSAAEKELSQLLQAQTALETAQSLYDLGNFSKSLEFIDKVVLVFSPDCTKAKLLKVKVLIADKEYEDAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRSDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALESCSEALKINEELVEALVQRGEAKLLTEDWEGAVNDMKSAAQKSPQDMSIREAVMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLGDEDKRVRYDRGEDLEEMGKGGGGGFNPFGGGGQQFTFNFEGGFPGGGFGGGYPGGFEFHF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00502 487 Pfam Tetratricopeptide repeat 261 317 - -
Lapu6g00502 487 PRINTS DnaJ domain signature 393 408 IPR001623 -
Lapu6g00502 487 PRINTS DnaJ domain signature 375 393 IPR001623 -
Lapu6g00502 487 PRINTS DnaJ domain signature 431 450 IPR001623 -
Lapu6g00502 487 PRINTS DnaJ domain signature 411 431 IPR001623 -
Lapu6g00502 487 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Lapu6g00502 487 SUPERFAMILY TPR-like 48 368 IPR011990 GO:0005515
Lapu6g00502 487 Gene3D Tetratricopeptide repeat domain 41 370 IPR011990 GO:0005515
Lapu6g00502 487 SUPERFAMILY Chaperone J-domain 367 476 IPR036869 -
Lapu6g00502 487 Pfam Tetratricopeptide repeat 87 118 IPR019734 GO:0005515
Lapu6g00502 487 SMART dnaj_3 372 431 IPR001623 -
Lapu6g00502 487 FunFam DnaJ subfamily C member 7 371 478 - -
Lapu6g00502 487 CDD DnaJ 373 428 IPR001623 -
Lapu6g00502 487 Gene3D DnaJ domain 371 478 IPR036869 -
Lapu6g00502 487 FunFam DnaJ domain containing protein 39 370 - -
Lapu6g00502 487 SMART tpr_5 86 119 IPR019734 GO:0005515
Lapu6g00502 487 SMART tpr_5 132 165 IPR019734 GO:0005515
Lapu6g00502 487 SMART tpr_5 201 234 IPR019734 GO:0005515
Lapu6g00502 487 SMART tpr_5 319 352 IPR019734 GO:0005515
Lapu6g00502 487 SMART tpr_5 285 318 IPR019734 GO:0005515
Lapu6g00502 487 SMART tpr_5 52 85 IPR019734 GO:0005515
Lapu6g00502 487 Pfam DnaJ domain 373 436 IPR001623 -
Lapu6g00502 487 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Lapu6g00502 487 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 487 IPR044620 -
Lapu6g00502 487 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00502 Lapu-Chr6 5190509 5195030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00502 369 436 C2H2 Transcription Factor Family AT1G74250 45.833 1.52e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00502 6 5190509 5195030 Lapu6g00502 6 5190509 5195030 ECH