Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00501 ATGCAAATGATACCCAGTGACCCCTTTTCACTATCCACTACCCTCCCAGGGCTTCCCAATGAACAAAACACAAACCCTAACCCTAATCATTCCACTCCACCCACCAAGAAGAAGAGAAATCTACCAGGAACTCCAGATCCAGATGCTGAGGTTATTGCCCTTTCACCAAAGACTCTCATGGCCACAAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACCTGTGTCCACCACCATGCTGCCAGGGCTCTCGGCGACCTCACGGGAATAAAAAAACATTATAGTAGAAAACACGGTGAAAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCAGTTCAATCTGATTGGAAAGCACACACCAAAACCTGTGGCACCAGAGAGTATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATTACACACAGGGCTTTCTGCGATGCCTTAGCCGAAGAGAGTTCGAGACTCTCCTCAGTTGCTACTAGTAGTCTAAATTTCAGGAGCGAAGATGCAACTGGGATGAATACACAGGCTGGTTTGTCGTCACGTGGATTAATCACTGGTCAGGGAGTGCAGAGTGTTCCACACTTTGGTCCACATGGGTTTCGTTTAATGGGGATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGAAATCATCACATTAATAACCCACTTGATGTGGCATCATCAAGTTCTTCAGGTTTACCTGAGGTTGTGCAAATGGCACAAGCTAATAATGCCTTGATTGGTTCTTCTTCAATATTCTCCAATTTTGGAATGCCTACTTCCAATTCAAAGGGAGAAGGTGGAGCTTCAGATTTGGCATCAATTTATTCTGAGAGTCAAAACAAGAATTCAATCTCAGCTTCCCCAATGTCAGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTCGGAGTCATGAGCTCATCTTCCACCCAAAGTACTAGTCTCAATAGCAATGCAAACCAAAACTGTGACCAACTTAACCAAGCCTTTCAGAACTTGAACCAACATGAGAATTTCAATGGAACAAACAGCAGTGCAACTATGTTGGGCAGTTCTACTAACTTTAGCTCATTGACACGTTCATCAAACGGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAAATCAGCTAAAGCTCCATCCCGGCTCAAACACAGTGGAACATAACTTAACAAGAGATTTTCTTGGCATGAGTAGAAATGGAGGTGGACATCCATTTCTACCCCAAGAGCTGGCCAAGTTTGCTTCCTTAGGCGCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1500 0.45 MQMIPSDPFSLSTTLPGLPNEQNTNPNPNHSTPPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLSSVATSSLNFRSEDATGMNTQAGLSSRGLITGQGVQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGNHHINNPLDVASSSSSGLPEVVQMAQANNALIGSSSIFSNFGMPTSNSKGEGGASDLASIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSLNSNANQNCDQLNQAFQNLNQHENFNGTNSSATMLGSSTNFSSLTRSSNGFDQFLMQNNVEPNQLKLHPGSNTVEHNLTRDFLGMSRNGGGHPFLPQELAKFASLGASMGLNQFTAGHQ* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00501 499 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Lapu6g00501 499 Gene3D Classic Zinc Finger 121 198 - -
Lapu6g00501 499 SMART c2h2final6 65 87 IPR013087 -
Lapu6g00501 499 SMART c2h2final6 141 161 IPR013087 -
Lapu6g00501 499 SMART c2h2final6 106 136 IPR013087 -
Lapu6g00501 499 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Lapu6g00501 499 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Lapu6g00501 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Lapu6g00501 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 472 IPR031140 -
Lapu6g00501 499 FunFam protein indeterminate-domain 12-like 44 112 - -
Lapu6g00501 499 Coils Coil 382 402 - -
Lapu6g00501 499 Gene3D Classic Zinc Finger 43 120 - -
Lapu6g00501 499 MobiDBLite consensus disorder prediction 1 38 - -
Lapu6g00501 499 MobiDBLite consensus disorder prediction 1 48 - -
Lapu6g00501 499 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00501 Lapu-Chr6 5182697 5184632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00501 1 486 IDZ Gene Family AT5G03150 47.653 1.16e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00501 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00501 K25870 - gmx:100789331 815.068