Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00500 ATGGAGAAAGATGCTAATTCAGGAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGACGAAGAGCTAATTGTTCACTATCTCAGAAACAAAGTGACATCATCACCCCTTCCTGCCTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGTCCGTGTAAAGCTTTGTTTGCGGAGGATGAATGGTATTTCTTTACTCCAAGGGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGGTATTGGAAGGCTACAGGCACTGACAAACCCATTTTTACTTCATTTGGGATGAAGAGTATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGTCGACCACCAAAAGGATCTAAAACTGATTGGATCATGCACGAGTACAGGTTGCACAATTCCATGACCTCCATTCCTCAGCAAAGAGGGTCCATGAGAGTAGGTCATCAATTGCATGATTTCAATTTTTCATCTTCTATAATGTTTGGTGGTTTTTTATGGCTAGAGTGA 537 0.4283 MEKDANSGIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSPCKALFAEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSFGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHNSMTSIPQQRGSMRVGHQLHDFNFSSSIMFGGFLWLE* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00500 178 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 142 - -
Lapu6g00500 178 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Lapu6g00500 178 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Lapu6g00500 178 SUPERFAMILY NAC domain 9 145 IPR036093 GO:0003677|GO:0006355
Lapu6g00500 178 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00500 Lapu-Chr6 5167487 5168178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00500 4 156 NAC Transcription Factor Family AT1G69490 66.667 4.32e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu6g00500 NAM 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00500 - - gmx:100788799 291.582