Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00499 ATGAGTGTCATCGACATTCTCACCAGAGTTGATTCCATCTGTAAAAAGTACGATAAATACGACGTCGAAAAGCAAAGGGATTCCAATATCTCCGCCGACGATGCATTCGCCAAACTCTACGCCTCTGTCGATGCCGAAATTGAGGCCTTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAAGTAAGGCGTCTACTGTAGCAATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTGCTGGAGGAGGTTTCCAAGTTGCAGAGATTGGCTATGAAAAAGGTAAAGGGGCTGTCATCGCAAGAATTTGCTGCCCGAAATGATTTGGTTCTTGCATTGCCAGATAGGATTCAAGCTATCCCAGATGGGACCCCTGCAGCACCCAAACAAACGGGAAGTTGGGCAGCTTCTGCCTCACGTCCTGGAATTAAATTTGATTCCGATGGACAATTCGATGATGGGTACTTCCAACAAACTGAAGAATCTAGTCGATTTAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATAGCAGAAGGATTGGATACTTTGAAAAATATGGCACATGATATGAATGAGGAATTGGATAGACAAGTACCACTGATGGATGAGATTGATGCTAAGGTGGACAAGGCATCTTCCGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGCTTCGGTCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAATGTGCTAAAGAAATGA 798 0.4261 MSVIDILTRVDSICKKYDKYDVEKQRDSNISADDAFAKLYASVDAEIEALLQKAETASKEKSKASTVAINAEIRRTKARLLEEVSKLQRLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAAPKQTGSWAASASRPGIKFDSDGQFDDGYFQQTEESSRFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLRDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00499 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Lapu6g00499 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Lapu6g00499 265 PANTHER SYNTAXIN 45 252 IPR045242 -
Lapu6g00499 265 CDD SNARE_Qc 175 230 - -
Lapu6g00499 265 Pfam SNARE domain 207 256 IPR000727 -
Lapu6g00499 265 Coils Coil 40 60 - -
Lapu6g00499 265 MobiDBLite consensus disorder prediction 121 142 - -
Lapu6g00499 265 Coils Coil 264 265 - -
Lapu6g00499 265 FunFam Putative syntaxin-71-like 170 231 - -
Lapu6g00499 265 Coils Coil 70 90 - -
Lapu6g00499 265 Gene3D - 170 231 - -
Lapu6g00499 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu6g00499 265 SMART tSNARE_6 165 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00499 Lapu-Chr6 5159085 5163880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00499 1 264 SNARE and Associated Proteins AT3G09740 76.692 4.40e-154 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00499 K08506 - gmx:100804155 473.011