Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00498 ATGGGGCATAGGCACGTATATAACACATCTTCATTGCTTGAGGGTGAGCCTGACCAGAACTGGAATCATGTGCACGCTGATCAACTATATGTGCACCTTGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCGGATAATATGTCTATAGATAACATTACTTTACCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCGTCCTCAGGTCACAACATTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCGTCTAGCGCTGGAGCATTCTTTACAGTGACAGAAAATCATGTACATCAACCTTCTTCTTCTTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTGCTGATCTTACAATGGGAAGTGGACAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACTAGTAGATACTTGAATGCTGGAAGTTCAACTGATCTTCCTATACCATCGGAATTATGGCAGGAGAAGCCAAATATTGATTCTCAATATATGCCATGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCCCTGCTCTTGATTTGGATTCCAACTCAGCTAGGACCTATTTATCAACTAATCATTCACATAATTCCTACCCTACTCTCCCACCAGTGGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTGCTACGTTGACCAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTCTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCATTTTCTTGTTGGAAGTGGTGCTACTGCTAGCAATGCTTCAGTAGATGTTGGGTGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTACTCCTCAAAGTTTTCAAAATAATCAAACCCAGACTACTAGGGGCATTCAAAGCAATTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCATGGGGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGATATCCAAGGCCATTGAGCACCCTTGGCTGGAGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCAAGTCAAAGGTATCGTTCGTTGACTGAGGAGAGTGGTCTCCACGAACGATTTGCCTCTCAGGGTTTCTTGGTTGTTGAGCGTGCATCGGTGTATGATTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTATGAGGACCTACTTGCACTTGGTGAGCGGATTGGCAATGTGAACACAGGACTCTCTGAGGATTTGTTTAACAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGAAAACTGTGTAATATGTCTGGAGGAGTACAAGAACATGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTATCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAAACATCTGCTTTGGCTGAGGATACAAGGGATAAATAA 1647 0.4244 MGHRHVYNTSSLLEGEPDQNWNHVHADQLYVHLGRTSTSENGSFIYPADNMSIDNITLPSHWNSSTRSNGYASSGHNIDVPPHQPDASGTSNDHFVHSSSAGAFFTVTENHVHQPSSSSNYDRQTFHVDGGFADLTMGSGQGPHKRKSPGISPVYERGSTSRYLNAGSSTDLPIPSELWQEKPNIDSQYMPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRPALDLDSNSARTYLSTNHSHNSYPTLPPVDHSSLVDVSGQTSATLTRDWSQMNISPANGRVLLPDTSAFGLETSHFLVGSGATASNASVDVGCFHHEFGTSRNPTPQSFQNNQTQTTRGIQSNYSQRSTPTFRASSSLRMGTSLDEGLPMVAESYSSRYPRPLSTLGWRNGDRNGRSRISSQRYRSLTEESGLHERFASQGFLVVERASVYDSRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGLSEDLFNKCLTETIYCSSEQSQDEENCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKTSALAEDTRDK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00498 548 MobiDBLite consensus disorder prediction 322 356 - -
Lapu6g00498 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 90 541 IPR045191 GO:0061630
Lapu6g00498 548 CDD RING-H2_RNF24-like 493 540 - -
Lapu6g00498 548 SMART ring_2 495 536 IPR001841 -
Lapu6g00498 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
Lapu6g00498 548 MobiDBLite consensus disorder prediction 64 95 - -
Lapu6g00498 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Lapu6g00498 548 SUPERFAMILY RING/U-box 484 540 - -
Lapu6g00498 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Lapu6g00498 548 Pfam Ring finger domain 494 537 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00498 Lapu-Chr6 5141723 5148161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00498 1 547 C3H Transcription Factor Family AT2G37150 41.441 7.98e-118 357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00498 6 5141723 5148161 Lapu6g00498 6 5141723 5148161 ECH